ETH Lib4RI: Research Data Management – The Basics
Research data management best practices in the ETH Lib4RI, the Library for the Research Institutes within the ETH Domain: Eawag, Empa, PSI & WSL
Keywords: data catalogue, data management, metadata, SciCat
Resource type: slides
ETH Lib4RI: Research Data Management – The Basics
https://www.lib4ri.ch/sites/default/files/media/documents/2023_05_PhD-Training_RDM_PSI_web.pdf
https://pan-training.eu/materials/eth-lib4ri-research-data-management-the-basics
Research data management best practices in the ETH Lib4RI, the Library for the Research Institutes within the ETH Domain: Eawag, Empa, PSI & WSL
data catalogue, data management, metadata, SciCat
research scientists
postdocs
PhD students
ExPaNDS and PaNOSC project members
PaN users
PaN Community
researchers
Active DMPs for Photon and Neutron RIs
This deliverable envisions an integrated aDMP system which supports the (semi-)
automated generation of DMPs by maximising reuse of information generated during the
research life-cycle and also aiming to support the scientists and other stakeholders by
supporting information transfer....
Keywords: expands, wp2-ExPaNDS, DMP, data management plan, data management
Resource type: Document
Active DMPs for Photon and Neutron RIs
https://zenodo.org/record/7223438
https://pan-training.eu/materials/active-dmps-for-photon-and-neutron-ris
This deliverable envisions an integrated aDMP system which supports the (semi-)
automated generation of DMPs by maximising reuse of information generated during the
research life-cycle and also aiming to support the scientists and other stakeholders by
supporting information transfer. Therefore, a data model for aDMPs focusing on the
integration of information that exists before a proposal is submitted and its life-cycle
integration is introduced. It relates the data model also to the template created in PaNOSC.
expands, wp2-ExPaNDS, DMP, data management plan, data management
PaN Community
Full-field Tomography at PSI
This workflow has some details on the instrument the data is produced from (TOMCAT beamline) and the infrastructure PSI has concerning their data.
If you are more interested in the science and want to reproduce the data and not bother with the surrounding details/context, please refer to the...
Keywords: synchrotron, imaging, Jupyter notebooks, Python, Pulmonary arterial hypertension
Resource type: workflow
Full-field Tomography at PSI
https://pan-training.eu/workflows/backup-fork-of-full-field-tomography-at-psi-wip#workflow
https://pan-training.eu/materials/full-field-tomography-at-psi
This workflow has some details on the instrument the data is produced from (TOMCAT beamline) and the infrastructure PSI has concerning their data.
If you are more interested in the science and want to reproduce the data and not bother with the surrounding details/context, please refer to the Pulmonary arterial hypertension research workflow.
Full-field Tomography at PSI
Tomography datasets often present large volumes (100 GBs - few TBs) difficult to compress and transfer. The tomographic reconstruction is highly demanding on compute (GPU) and storage resources for the intermediate and/or final result. In addition, the optional image segmentation step may be demanding on computer memory.
The offline analysis (after experiment) could be performed remotely by users at home making it attractive for deployment as a cloud-like use case. Finally, this technique is applied at many facilities and in different scientific domains - therefore a portable result is more useful.
This entire process is illustrated with a typical experiment.
synchrotron, imaging, Jupyter notebooks, Python, Pulmonary arterial hypertension
research data scientist
life scientists
Final recommendations for FAIR Photon and Neutron Data Management
The present deliverable pursues the work initiated in ExPaNDS deliverable 2.2, which established a common metadata framework for FAIR data generated in Photon and Neutron (PaN) facilities. The modalities of implementation of this framework across facilities are examined and current practices and...
Keywords: expands, wp2-ExPaNDS, FAIR, data management
Resource type: Document
Final recommendations for FAIR Photon and Neutron Data Management
https://zenodo.org/record/6821676#.YwiWdnHP02w
https://pan-training.eu/materials/final-recommendations-for-fair-photon-and-neutron-data-management
The present deliverable pursues the work initiated in ExPaNDS deliverable 2.2, which established a common metadata framework for FAIR data generated in Photon and Neutron (PaN) facilities. The modalities of implementation of this framework across facilities are examined and current practices and tools for metadata capture, storage and exposure are highlighted. This work is also the occasion to examine the commonalities of the framework with other initiatives developed inside and outside ExPaNDS such as the common search API, the data catalogues (ExPaNDS WP3), the EOSC discovery platforms B2FIND and OpenAire as well as the NeXus data format. It also provides the reader with guidelines on current tools and schemata available to record provenance and digital preservation information. The essence of these discussions is summarised as a list of practical recommendations at the end.
expands, wp2-ExPaNDS, FAIR, data management
PaN Community
Workshop on Metadata Catalogues
Presentations from the Workshop on Metadata Catalogues, which took place virtually via Zoom on the 4th April 2022.
Keywords: data catalogue, SciCat, ICAT, expands, panet, PaNOSC, metadata, data management, data processing, wp3-ExPaNDS
Resource type: slides, video
Workshop on Metadata Catalogues
https://zenodo.org/record/6414117
https://pan-training.eu/materials/workshop-on-metadata-catalogues
Presentations from the Workshop on Metadata Catalogues, which took place virtually via Zoom on the 4th April 2022.
data catalogue, SciCat, ICAT, expands, panet, PaNOSC, metadata, data management, data processing, wp3-ExPaNDS
data curator
data managers
research data engineer
ExPaNDS and PaNOSC project members
PaN users
PaN Community
Outreach videos about experiments done at ALBA
Here you will find a series of videos about the different applications of synchrotron light. Videos are in Spanish and Catalan, although subtitles are available in English, Catalan and Spanish.
Its aim is to transmit in a simple and understandable way a selection of the applications that can...
Keywords: synchrotron, synchrotron light, applications
Resource type: video
Outreach videos about experiments done at ALBA
https://www.cells.es/en/outreach/videos
https://pan-training.eu/materials/outreach-videos-about-experiments-done-at-alba
Here you will find a series of videos about the different applications of synchrotron light. Videos are in Spanish and Catalan, although subtitles are available in English, Catalan and Spanish.
Its aim is to transmit in a simple and understandable way a selection of the applications that can have the synchrotron light in different scientific fields: health, food, environment, cultural heritage, etc.
These videos are part of the project FCT-15-9828 "Bringing science to society – Outreach science program of the ALBA Synchrotron", funded by the Spanish Foundation for Science and Technology (FECYT) - Ministry of Economy and Competitiveness and the Foundation Obra Social "la Caixa".
synchrotron, synchrotron light, applications
general public
The FAIR Experiment
Video recording of the workshop exploring the FAIR Experiment at PaN facilities (02/10/2020)
Keywords: FAIR, research data, data management, metadata, wp2-ExPaNDS
Resource type: video
The FAIR Experiment
https://vimeo.com/493767139
https://pan-training.eu/materials/the-fair-experiment
Video recording of the workshop exploring the FAIR Experiment at PaN facilities (02/10/2020)
FAIR, research data, data management, metadata, wp2-ExPaNDS
facility staff
instrument scientist