ETH Lib4RI: Research Data Management – The Basics
Research data management best practices in the ETH Lib4RI, the Library for the Research Institutes within the ETH Domain: Eawag, Empa, PSI & WSL
Keywords: data catalogue, data management, metadata, SciCat
Resource type: slides
ETH Lib4RI: Research Data Management – The Basics
https://www.lib4ri.ch/sites/default/files/media/documents/2023_05_PhD-Training_RDM_PSI_web.pdf
https://pan-training.eu/materials/eth-lib4ri-research-data-management-the-basics
Research data management best practices in the ETH Lib4RI, the Library for the Research Institutes within the ETH Domain: Eawag, Empa, PSI & WSL
data catalogue, data management, metadata, SciCat
research scientists
postdocs
PhD students
ExPaNDS and PaNOSC project members
PaN users
PaN Community
researchers
Full-field Tomography at PSI
This workflow has some details on the instrument the data is produced from (TOMCAT beamline) and the infrastructure PSI has concerning their data.
If you are more interested in the science and want to reproduce the data and not bother with the surrounding details/context, please refer to the...
Keywords: synchrotron, imaging, Jupyter notebooks, Python, Pulmonary arterial hypertension
Resource type: workflow
Full-field Tomography at PSI
https://pan-training.eu/workflows/backup-fork-of-full-field-tomography-at-psi-wip#workflow
https://pan-training.eu/materials/full-field-tomography-at-psi
This workflow has some details on the instrument the data is produced from (TOMCAT beamline) and the infrastructure PSI has concerning their data.
If you are more interested in the science and want to reproduce the data and not bother with the surrounding details/context, please refer to the Pulmonary arterial hypertension research workflow.
Full-field Tomography at PSI
Tomography datasets often present large volumes (100 GBs - few TBs) difficult to compress and transfer. The tomographic reconstruction is highly demanding on compute (GPU) and storage resources for the intermediate and/or final result. In addition, the optional image segmentation step may be demanding on computer memory.
The offline analysis (after experiment) could be performed remotely by users at home making it attractive for deployment as a cloud-like use case. Finally, this technique is applied at many facilities and in different scientific domains - therefore a portable result is more useful.
This entire process is illustrated with a typical experiment.
synchrotron, imaging, Jupyter notebooks, Python, Pulmonary arterial hypertension
research data scientist
life scientists
Workshop on Metadata Catalogues
Presentations from the Workshop on Metadata Catalogues, which took place virtually via Zoom on the 4th April 2022.
Keywords: data catalogue, SciCat, ICAT, expands, panet, PaNOSC, metadata, data management, data processing, wp3-ExPaNDS
Resource type: slides, video
Workshop on Metadata Catalogues
https://zenodo.org/record/6414117
https://pan-training.eu/materials/workshop-on-metadata-catalogues
Presentations from the Workshop on Metadata Catalogues, which took place virtually via Zoom on the 4th April 2022.
data catalogue, SciCat, ICAT, expands, panet, PaNOSC, metadata, data management, data processing, wp3-ExPaNDS
data curator
data managers
research data engineer
ExPaNDS and PaNOSC project members
PaN users
PaN Community
Outreach videos about experiments done at ALBA
Here you will find a series of videos about the different applications of synchrotron light. Videos are in Spanish and Catalan, although subtitles are available in English, Catalan and Spanish.
Its aim is to transmit in a simple and understandable way a selection of the applications that can...
Keywords: synchrotron, synchrotron light, applications
Resource type: video
Outreach videos about experiments done at ALBA
https://www.cells.es/en/outreach/videos
https://pan-training.eu/materials/outreach-videos-about-experiments-done-at-alba
Here you will find a series of videos about the different applications of synchrotron light. Videos are in Spanish and Catalan, although subtitles are available in English, Catalan and Spanish.
Its aim is to transmit in a simple and understandable way a selection of the applications that can have the synchrotron light in different scientific fields: health, food, environment, cultural heritage, etc.
These videos are part of the project FCT-15-9828 "Bringing science to society – Outreach science program of the ALBA Synchrotron", funded by the Spanish Foundation for Science and Technology (FECYT) - Ministry of Economy and Competitiveness and the Foundation Obra Social "la Caixa".
synchrotron, synchrotron light, applications
general public
Tour of MAX IV accelerators with professor Sverker Werin
Join us in the tour of MAX IV Laboratory's accelerators hosted by Sverker Werin, professor in accelerator physics at Lund University and MAX IV.
The electron guns 00:24
Along the linear accelerator 2:59
The bunch compressor 4:42
The 1.5 GeV ring extraction point 5:47
The modulators and...
Keywords: synchrotron, accelerator physics
Resource type: video
Tour of MAX IV accelerators with professor Sverker Werin
https://www.youtube.com/watch?v=2TJMFlkyFwc
https://pan-training.eu/materials/tour-of-max-iv-accelerators-with-professor-sverker-werin
Join us in the tour of MAX IV Laboratory's accelerators hosted by Sverker Werin, professor in accelerator physics at Lund University and MAX IV.
The electron guns 00:24
Along the linear accelerator 2:59
The bunch compressor 4:42
The 1.5 GeV ring extraction point 5:47
The modulators and klystrons 7:03
In the 3.0 GeV storage ring 8:13
The undulators in the 3.0 GeV rings 10:50
The start of the photon beam 11:57
Topping up energy in the storage ring 12:42
In the MAX IV accelerator exhibition 13:39
synchrotron, accelerator physics
PaN Community
beamline users
Develop common rules and best practices between national RI’s and harmonize the provision of the EOSC services
Slides (and other resources) of the presentations done at this workshop.
How is ExPaNDS delivering its data services to PaNOSC and EOSC?
- Day 1. Data catalogues: getting our open datasets harvested by the community
- Day 2. Data analysis: getting our software in the PaN software...
Keywords: expands, workshop, SciCat, ICAT, B2FIND, OpenAIRE, EOSC, OAI-PMH, data catalogue, wp1-ExPaNDS
Develop common rules and best practices between national RI’s and harmonize the provision of the EOSC services
https://indico.desy.de/event/29297/
https://pan-training.eu/materials/develop-common-rules-and-best-practices-between-national-ri-s-and-harmonize-the-provision-of-the-eosc-services
Slides (and other resources) of the presentations done at this workshop.
How is ExPaNDS delivering its data services to PaNOSC and EOSC?
- Day 1. Data catalogues: getting our open datasets harvested by the community
- Day 2. Data analysis: getting our software in the PaN software catalogue, getting pipelines to run, ensuring their quality over time
expands, workshop, SciCat, ICAT, B2FIND, OpenAIRE, EOSC, OAI-PMH, data catalogue, wp1-ExPaNDS
PaN Community
ExPaNDS and PaNOSC project members
Metadata Catalogue Release
Self-contained, stand-alone metadata catalogue release that facilities can download to test/try and play with.
Keywords: ICAT, SciCat, PaNOSC, data catalogue, expands, wp3-ExPaNDS
Resource type: docker, docker-compose, software, git
Metadata Catalogue Release
https://zenodo.org/record/5205909#.YYE4fb_MKV5
https://pan-training.eu/materials/metadata-catalogue-release
Self-contained, stand-alone metadata catalogue release that facilities can download to test/try and play with.
ICAT, SciCat, PaNOSC, data catalogue, expands, wp3-ExPaNDS
PaN Community
ExPaNDS and PaNOSC project members
engineers
research data engineer
Delivering data services to EOSC
Wiki page recording the ExPaNDS training workshop on data services for EOSC (06/04/2021)
Keywords: OAI-PMH, metadata, harvesting, SciCat, ICAT, B2FIND, OpenAIRE, research data, wp3-ExPaNDS
Resource type: wiki
Delivering data services to EOSC
https://github.com/ExPaNDS-eu/ExPaNDS/wiki/Delivering-data-services-to-EOSC
https://pan-training.eu/materials/delivering-data-services-to-eosc
Wiki page recording the ExPaNDS training workshop on data services for EOSC (06/04/2021)
OAI-PMH, metadata, harvesting, SciCat, ICAT, B2FIND, OpenAIRE, research data, wp3-ExPaNDS
data curator
research data scientist