23 materials found
Difficulty level:
Medium
Integrator documentation
Documentation for Integrator, a distributed azimuthal integration software used at the European Synchrotron Radiation Facility (ESRF)
Scientific topics: scattering technique, powder diffraction
Keywords: computation distribution, azimuthal integration, high-performance
Resource type: Document
Integrator documentation
https://www.silx.org/pub/integrator/doc/
https://pan-training.eu/materials/integrator-documentation
Documentation for Integrator, a distributed azimuthal integration software used at the European Synchrotron Radiation Facility (ESRF)
scattering technique
powder diffraction
computation distribution, azimuthal integration, high-performance
Nabu documentation
Documentation for Nabu, a tomography software used at the European Synchrotron Radiation Facility (ESRF)
Scientific topics: tomography
Keywords: tomography, reconstruction, full-field, phase contrast, high-performance
Resource type: Document
Nabu documentation
https://www.silx.org/pub/nabu/doc/
https://pan-training.eu/materials/nabu-documentation
Documentation for Nabu, a tomography software used at the European Synchrotron Radiation Facility (ESRF)
tomography
tomography, reconstruction, full-field, phase contrast, high-performance
Computational Reproducibility with the shell, Git and Docker
This workshop provides an overview over tools for computational reproducibility in research. At the end of this workshop participants will be able to navigate via the shell and use it for version control with Git. They will know what types of projects require which forms of computing environments...
Keywords: scientific software, reproducibility, docker container, version control, shell
Resource type: slides
Computational Reproducibility with the shell, Git and Docker
https://osf.io/ar57z/
https://pan-training.eu/materials/computational-reproducibility-with-the-shell-git-and-docker
This workshop provides an overview over tools for computational reproducibility in research. At the end of this workshop participants will be able to navigate via the shell and use it for version control with Git. They will know what types of projects require which forms of computing environments and be able to set up a Docker container to run computations in a reproducible way.
scientific software, reproducibility, docker container, version control, shell
research data scientist
PhD students
researchers
scientists
Containerized Serial Crystallography “CrystFEL” VISA workflow
Experiments generate up to 150 TB per day of data saved at the measurement facility. Such large datasets are impractical for users to take home.
Subsequent analysis needs to be performed remotely making it attractive for deployment as a cloud-like use case. Involving EOSC in the analysis and...
Scientific topics: crystallography
Keywords: CrystFEL, Serial crystallography, pulsed X-ray beam, VISA
Resource type: workflow
Containerized Serial Crystallography “CrystFEL” VISA workflow
https://pan-training.eu/workflows/containerized-serial-crystallography-visa-workflow
https://pan-training.eu/materials/containerized-serial-crystallography-crystfel-visa-workflow
Experiments generate up to 150 TB per day of data saved at the measurement facility. Such large datasets are impractical for users to take home.
Subsequent analysis needs to be performed remotely making it attractive for deployment as a cloud-like use case. Involving EOSC in the analysis and re-use of this data is an appropriate use case.
Serial crystallography is a beam-line technique for collecting information on the structure of a protein without growing large protein crystals. Instead, a large number of small protein crystals are held in a pulsed X-ray beam. In a second step, the series of produced images are used to reconstruct a precise 3-D image of the protein structure. Serial crystallography is the preferred technique for obtaining diffraction data of proteins at room temperature, where radiation damage from the X-ray beam starts rapidly. The standard software for analysing serial crystallography is “CrystFEL”.
The proposed workflow was rendered in a standard fashion, which would allow it to be easily adopted by arbitrary systems or also other containerized applications. The only requirements are an Apptainer installation on the system and a Docker or Singularity/Apptainer image of the application, as well as an adjustment of the configuration file for the wrapper script.
crystallography
CrystFEL, Serial crystallography, pulsed X-ray beam, VISA
research data scientist
scientific
Full-field Tomography at PSI
This workflow has some details on the instrument the data is produced from (TOMCAT beamline) and the infrastructure PSI has concerning their data.
If you are more interested in the science and want to reproduce the data and not bother with the surrounding details/context, please refer to the...
Keywords: synchrotron, imaging, Jupyter notebooks, Python, Pulmonary arterial hypertension
Resource type: workflow
Full-field Tomography at PSI
https://pan-training.eu/workflows/backup-fork-of-full-field-tomography-at-psi-wip#workflow
https://pan-training.eu/materials/full-field-tomography-at-psi
This workflow has some details on the instrument the data is produced from (TOMCAT beamline) and the infrastructure PSI has concerning their data.
If you are more interested in the science and want to reproduce the data and not bother with the surrounding details/context, please refer to the Pulmonary arterial hypertension research workflow.
Full-field Tomography at PSI
Tomography datasets often present large volumes (100 GBs - few TBs) difficult to compress and transfer. The tomographic reconstruction is highly demanding on compute (GPU) and storage resources for the intermediate and/or final result. In addition, the optional image segmentation step may be demanding on computer memory.
The offline analysis (after experiment) could be performed remotely by users at home making it attractive for deployment as a cloud-like use case. Finally, this technique is applied at many facilities and in different scientific domains - therefore a portable result is more useful.
This entire process is illustrated with a typical experiment.
synchrotron, imaging, Jupyter notebooks, Python, Pulmonary arterial hypertension
research data scientist
life scientists
Training Workflow on Terahertz Spectroscopy at TELBE
The radiation source ELBE (Electron Linac for beams with high Brilliance and low Emittance) at the Helmholtz Centre Dresden Rossendorf (HZDR) can produce several kinds of secondary radiations. THz radiation is one of them and can be used with a typical pulse frequency of 100 kHz as a stimulation...
Scientific topics: spectroscopy, THz photon probe
Keywords: terahertz, Higgs, dataset, data analysis, spectroscopy, FAIR, training, TELBE, photon, metadata, TELBE
Resource type: lesson, workflow, training
Training Workflow on Terahertz Spectroscopy at TELBE
https://pan-training.eu/workflows/telbe
https://pan-training.eu/materials/terahertz-spectroscopy-workflow
The radiation source ELBE (Electron Linac for beams with high Brilliance and low Emittance) at the Helmholtz Centre Dresden Rossendorf (HZDR) can produce several kinds of secondary radiations. THz radiation is one of them and can be used with a typical pulse frequency of 100 kHz as a stimulation source for elementary low-energy degrees of freedom in matter.
In this training workflow brings together background information of the experiment, the facility used, as well as the processing techniques and steps to understand the data generated by the experiment:
* The open accessible dataset
* The software
* Services to execute the analysis
spectroscopy
THz photon probe
terahertz, Higgs, dataset, data analysis, spectroscopy, FAIR, training, TELBE, photon, metadata, TELBE
PaN Community
beamline users
graduate students
ILL's PhD talks
This YouTube playlist displays the ILL PhD seminars, recorded in winter and spring 2021.
We thank all the speakers who have agreed to have their presentation shared in this collection, curated by Valerie Duchasténier and Steph Monfront.
Scientific topics: neutron scattering, small angle neutron scattering, time-of-flight spectrometry, magnetism technique, neutron time of flight technique
Keywords: neutron scattering theorie, neutron transport , monochromization, polarized neutrons, multi grid detectors, guide fields and solenoids, quasi-elastic neutron scattering, Small Angle Neutron Scattering, time-of-flight, magnetism and neutrons, ultra cold neutrons, Nuclear Physics
Resource type: video
ILL's PhD talks
https://www.youtube.com/playlist?list=PLA2s_idZ6bwFdB-HUrmKllBq7Uhsl3gpX
https://pan-training.eu/materials/ill-s-phd-talks
This YouTube playlist displays the ILL PhD seminars, recorded in winter and spring 2021.
We thank all the speakers who have agreed to have their presentation shared in this collection, curated by Valerie Duchasténier and Steph Monfront.
neutron scattering
small angle neutron scattering
time-of-flight spectrometry
magnetism technique
neutron time of flight technique
neutron scattering theorie, neutron transport , monochromization, polarized neutrons, multi grid detectors, guide fields and solenoids, quasi-elastic neutron scattering, Small Angle Neutron Scattering, time-of-flight, magnetism and neutrons, ultra cold neutrons, Nuclear Physics
PhD students
Offline data analysis tutorial
Tutorial on European XFEL offline data analysis as per example of MID instrument data
Scientific topics: small angle x-ray scattering
Keywords: Extra-data, Extra-geom, pyFAI, data analysis
Resource type: jupyter notebook
Offline data analysis tutorial
https://indico.desy.de/event/33127/contributions/117081/
https://pan-training.eu/materials/offline-analysis-tutorial
Tutorial on European XFEL offline data analysis as per example of MID instrument data
small angle x-ray scattering
Extra-data, Extra-geom, pyFAI, data analysis
PaN users
beamline users
research data scientist
Advanced infrastructure for PIDs in Photon and Neutron RIs
This deliverable accumulates results of ExPaNDS works on the topic of persistent identifiers (PIDs) in facilities research. It refers to the substantial effort of persistent identifiers adoption in facilities and in a larger research ecosystem, and provides a general guidance, as well as...
Keywords: persistent identifiers, wp2-ExPaNDS
Resource type: project deliverable
Advanced infrastructure for PIDs in Photon and Neutron RIs
https://zenodo.org/record/5905351#.Yk6-5S8RoeY
https://pan-training.eu/materials/advanced-infrastructure-for-pids-in-photon-and-neutron-ris
This deliverable accumulates results of ExPaNDS works on the topic of persistent identifiers (PIDs) in facilities research. It refers to the substantial effort of persistent identifiers adoption in facilities and in a larger research ecosystem, and provides a general guidance, as well as prioritised recommendations for research information practitioners who consider going beyond the current levels of persistent identifiers adoption by photon and neutron research infrastructures.
persistent identifiers, wp2-ExPaNDS
facility staff
scientists
Introduction to neutron sources
Introduction to Neutron Sources by Dr. Márton Markó from CERIC’s Hungarian Partner Facility, Budapest Neutron Center (BNC)
Keywords: neutron sources
Resource type: video
Introduction to neutron sources
https://youtu.be/y0K024w-M30
https://pan-training.eu/materials/introduction-to-neutron-sources
Introduction to Neutron Sources by Dr. Márton Markó from CERIC’s Hungarian Partner Facility, Budapest Neutron Center (BNC)
neutron sources
PaN Community
PaN users
PhD students
Introduction to Soft X-ray Transmission and Emission Microscope, TwinMic at Elettra Sincrotrone Trieste
Introduction to the TwinMic Beamline:
Soft X-ray Transmission and Emission Microscope at the CERIC Italian partner facility, Elettra Sincrotrone Trieste
---TwinMic beamline webpage in the CERIC website:...
Keywords: soft X-ray Microscopy, synchrotron, Central European Research Infrastructure Consortium, CERIC, synchrotron beamline, microscopy, electrochemistry, battery research, Heritage Science, Elettra synchrotron, Elettra Sincrotrone Trieste, life sciences, microscope
Resource type: video
Introduction to Soft X-ray Transmission and Emission Microscope, TwinMic at Elettra Sincrotrone Trieste
https://youtu.be/Z7bo5jgOhWU
https://pan-training.eu/materials/introduction-to-soft-x-ray-transmission-and-emission-microscope-twinmic-at-elettra-sincrotrone-trieste
Introduction to the TwinMic Beamline:
Soft X-ray Transmission and Emission Microscope at the CERIC Italian partner facility, Elettra Sincrotrone Trieste
---TwinMic beamline webpage in the CERIC website: https://www.ceric-eric.eu/lab-instrument/soft-x-ray-transmission-and-emission-microscope/
---TwinMic beamline webpage in the Elettra website: https://www.elettra.trieste.it/elettra-beamlines/twinmic.html
soft X-ray Microscopy, synchrotron, Central European Research Infrastructure Consortium, CERIC, synchrotron beamline, microscopy, electrochemistry, battery research, Heritage Science, Elettra synchrotron, Elettra Sincrotrone Trieste, life sciences, microscope
researchers
scientists
PhD students
chemists
physicists
biologists
Introduction to High-Resolution Transmission Electron Microscopy (HRTEM) and Electron Paramagnetic Resonance (EPR) at NIMP
Introduction, by Corneliu Ghica and Mariana Stefan, to High-Resolution Transmission Electron Microscopy (HRTEM) and Electron Paramagnetic Resonance (EPR) at the National Institute of Materials Physics in Magurele, Romania
HRTEM webpage:...
Keywords: High-Resolution Transmission Electron Microscopy (HRTEM), Electron Paramagnetic Resonance (EPR), CERIC, Central European Research Infrastructure Consortium, National Institute of Materials Physics, life sciences, Materials Science, Heritage Science, astrobiology, biomedical nanomaterials, radiation detection, radiation conversion, semiconductors, insulating materials
Resource type: video
Introduction to High-Resolution Transmission Electron Microscopy (HRTEM) and Electron Paramagnetic Resonance (EPR) at NIMP
https://youtu.be/2gEmR0r68mc
https://pan-training.eu/materials/introduction-to-high-resolution-transmission-electron-microscopy-hrtem-and-electron-paramagnetic-resonance-epr-at-nimp
Introduction, by Corneliu Ghica and Mariana Stefan, to High-Resolution Transmission Electron Microscopy (HRTEM) and Electron Paramagnetic Resonance (EPR) at the National Institute of Materials Physics in Magurele, Romania
HRTEM webpage: https://www.ceric-eric.eu/lab-instrument/high-resolution-transmission-electron-microscopy/
EPR webpage: https://www.ceric-eric.eu/lab-instrument/electron-paramagnetic-resonance/
High-Resolution Transmission Electron Microscopy (HRTEM), Electron Paramagnetic Resonance (EPR), CERIC, Central European Research Infrastructure Consortium, National Institute of Materials Physics, life sciences, Materials Science, Heritage Science, astrobiology, biomedical nanomaterials, radiation detection, radiation conversion, semiconductors, insulating materials
researchers
scientists
PhD students
physicists
material scientists
Introduction to solid-State Nuclear Magnetic Resonance (NMR) at the Slovenian NMR Centre
Introduction to Solid-State Nuclear Magnetic Resonance (NMR) at the CERIC Slovenian partner facility, the Slovenian NMR Centre at the National Institute of Chemistry in Ljubljana
by Gregor Mali and Andraž Krajnc
Link to related NMR webpages:...
Keywords: Solid-state nuclear magnetic resonance, NMR, life sciences, battery research, pharmaceutical research, NMR spectra, NMR spectroscopy, Slovenian NMR Centre, CERIC, Central European Research Infrastructure Consortium
Resource type: video
Introduction to solid-State Nuclear Magnetic Resonance (NMR) at the Slovenian NMR Centre
https://youtu.be/WIm9OG_DBoc
https://pan-training.eu/materials/introduction-to-solid-state-nuclear-magnetic-resonance-nmr-at-the-slovenian-nmr-centre
Introduction to Solid-State Nuclear Magnetic Resonance (NMR) at the CERIC Slovenian partner facility, the Slovenian NMR Centre at the National Institute of Chemistry in Ljubljana
by Gregor Mali and Andraž Krajnc
Link to related NMR webpages: https://www.ceric-eric.eu/lab-instrument/600-mhz-nuclear-magnetic-resonance-spectometer-2/
Solid-state nuclear magnetic resonance, NMR, life sciences, battery research, pharmaceutical research, NMR spectra, NMR spectroscopy, Slovenian NMR Centre, CERIC, Central European Research Infrastructure Consortium
researchers
scientists
PhD students
researchers in energy materials
chemists
Introduction to Liquid-State Nuclear Magnetic Resonance (NMR)
Introduction to Liquid-State Nuclear Magnetic Resonance (NMR) at the CERIC Slovenian partner facility, the Slovenian NMR Centre at the National Institute of Chemistry in Ljubljana
To get more insights on NMR spectroscopy, watch also the video on Solid-state NMR at: https://youtu.be/RVMAKM6RnRM
Keywords: Liquid-state NMR, NMR, Nuclear Magnetic Resonance, life sciences, COVID research, nucleic acids research, biochemistry, drug development
Resource type: video
Introduction to Liquid-State Nuclear Magnetic Resonance (NMR)
https://youtu.be/rX28mVzGeuQ
https://pan-training.eu/materials/introduction-to-liquid-state-nuclear-magnetic-resonance-nmr
Introduction to Liquid-State Nuclear Magnetic Resonance (NMR) at the CERIC Slovenian partner facility, the Slovenian NMR Centre at the National Institute of Chemistry in Ljubljana
To get more insights on NMR spectroscopy, watch also the video on Solid-state NMR at: https://youtu.be/RVMAKM6RnRM
Liquid-state NMR, NMR, Nuclear Magnetic Resonance, life sciences, COVID research, nucleic acids research, biochemistry, drug development
scientists
researchers
PhD students
biochemists
chemists
Neutron Diffractometer with a Position Sensitive Detector (PSD) at BNC
Introduction by Margit Fabian, to the Neutron Diffractometer with a Position Sensitive Detector (PSD) at the the CERIC Hungarian partner facility, the Budapest Neutron Centre of the Centre for Energy Research (EK)
PSD webpage:...
Keywords: Budapest Neutron Centre, Centre for Energy Research, Neutron Diffractometer with Position Sensitive Detector, neutron research, neutron diffractometry, optical medicine, radioactive waste stabilization, laser development, human bone regeneration, battery research, solid-state batteries, neutron powder diffraction
Resource type: video
Neutron Diffractometer with a Position Sensitive Detector (PSD) at BNC
https://youtu.be/W1E0Ukr9jEs
https://pan-training.eu/materials/neutron-diffractometer-with-a-position-sensitive-detector-psd-at-bnc
Introduction by Margit Fabian, to the Neutron Diffractometer with a Position Sensitive Detector (PSD) at the the CERIC Hungarian partner facility, the Budapest Neutron Centre of the Centre for Energy Research (EK)
PSD webpage: https://www.ceric-eric.eu/lab-instrument/neutron-diffractometer-with-a-position-sensitive-detector-system/
Budapest Neutron Centre, Centre for Energy Research, Neutron Diffractometer with Position Sensitive Detector, neutron research, neutron diffractometry, optical medicine, radioactive waste stabilization, laser development, human bone regeneration, battery research, solid-state batteries, neutron powder diffraction
scientists
researchers
PhD students
researchers in energy materials
Introduction to Angle Resolved Photoelectron Spectroscopy - ARPES Beamline at the SOLARIS synchrotron
Introduction to the ARPES Beamline by Prof. Jacek J. Kolodziej and Natalia Olszowska:
Angle Resolved Photoelectron Spectroscopy at the CERIC Polish partner facility, the National Synchrotron Radiation Centre SOLARIS in Krakow, Poland
ARPES webpage:...
Keywords: photoemission spectroscopy, Angle Resolved Photoemission Spectroscopy, superconducotrs, semiconductors, graphene research, 2D materials, topological insulators
Resource type: video
Introduction to Angle Resolved Photoelectron Spectroscopy - ARPES Beamline at the SOLARIS synchrotron
https://youtu.be/Zmi2Nwh5ySQ
https://pan-training.eu/materials/introduction-to-angle-resolved-photoelectron-spectroscopy-arpes-beamline-at-the-solaris-synchrotron
Introduction to the ARPES Beamline by Prof. Jacek J. Kolodziej and Natalia Olszowska:
Angle Resolved Photoelectron Spectroscopy at the CERIC Polish partner facility, the National Synchrotron Radiation Centre SOLARIS in Krakow, Poland
ARPES webpage: https://www.ceric-eric.eu/lab-instrument/ultra-angle-resolved-photoelectron-spectroscopy/
photoemission spectroscopy, Angle Resolved Photoemission Spectroscopy, superconducotrs, semiconductors, graphene research, 2D materials, topological insulators
scientists
researchers
Materials scientists
PhD students
Introduction to Small-Angle X-ray Scattering - SAXS beamline at the TUGraz Outstation at the Elettra synchrotron
Introduction to the SAXS Beamline by Heinz Amenitsch and Barbara Sartori: :
Small-Angle X-ray Scattering at the CERIC Austrian partner facility of the Graz University of Technology at the Elettra synchrotron in Trieste, Italy
Link to SAXS webpage:...
Keywords: Small-Angle X-ray scattering, Materials Science, COVID research, life sciences, drug delivery, surface science
Resource type: video
Introduction to Small-Angle X-ray Scattering - SAXS beamline at the TUGraz Outstation at the Elettra synchrotron
https://youtu.be/MyFEePGkk0w
https://pan-training.eu/materials/introduction-to-small-angle-x-ray-scattering-saxs-beamline-at-the-tugraz-outstation-at-the-elettra-synchrotron
Introduction to the SAXS Beamline by Heinz Amenitsch and Barbara Sartori: :
Small-Angle X-ray Scattering at the CERIC Austrian partner facility of the Graz University of Technology at the Elettra synchrotron in Trieste, Italy
Link to SAXS webpage: https://www.ceric-eric.eu/lab-instrument/small-angle-x-ray-scattering/
Small-Angle X-ray scattering, Materials Science, COVID research, life sciences, drug delivery, surface science
scientists
researchers
Materials scientists
biologists
chemists
life scientists
Introduction to SANS: Small Angle Neutron Scattering at BNC
Introduction to SANS Introduction to SANS by Adél Len and László Almásy:
Small Angle Neutron Scattering at the CERIC Hungarian partner facility, the Budapest Neutron Centre of the Centre for Energy Research (EK)
Link to SANS webpage:...
Keywords: neutron scattering, Small Angle Neutron Scattering, Materials Science, drug delivery, Heritage Science, pharmaceutical research
Resource type: video
Introduction to SANS: Small Angle Neutron Scattering at BNC
https://youtu.be/84hiIjjQdCg
https://pan-training.eu/materials/introduction-to-sans-small-angle-neutron-scattering-at-bnc
Introduction to SANS Introduction to SANS by Adél Len and László Almásy:
Small Angle Neutron Scattering at the CERIC Hungarian partner facility, the Budapest Neutron Centre of the Centre for Energy Research (EK)
Link to SANS webpage: https://www.ceric-eric.eu/lab-instrument/small-angle-neutron-scattering-diffractometer/
neutron scattering, Small Angle Neutron Scattering, Materials Science, drug delivery, Heritage Science, pharmaceutical research
scientists
researchers
archaeologist
biologists
Materials scientists
Introduction to PGAA: Prompt-Gamma Neutron Activation Analysis and Neutron Imaging at BNC
Introduction by László Szentmiklósi, to Prompt-Gamma Neutron Activation Analysis (PGAA) and Neutron Imaging at the the CERIC-ERIC Hungarian partner facility, the Budapest Neutron Centre of the Centre for Energy Research (EK)
Link to PGAA webpage:...
Keywords: Prompt-Gamma Neutron Activation Analysis, PGAA, Neutron imaging, archaeology, Materials Science, Heritage Science, Engineering
Resource type: video
Introduction to PGAA: Prompt-Gamma Neutron Activation Analysis and Neutron Imaging at BNC
https://youtu.be/APCQiATOR7g
https://pan-training.eu/materials/introduction-to-pgaa-prompt-gamma-neutron-activation-analysis-and-neutron-imaging-at-bnc
Introduction by László Szentmiklósi, to Prompt-Gamma Neutron Activation Analysis (PGAA) and Neutron Imaging at the the CERIC-ERIC Hungarian partner facility, the Budapest Neutron Centre of the Centre for Energy Research (EK)
Link to PGAA webpage: https://www.ceric-eric.eu/lab-instrument/prompt-gamma-neutron-activation-analysis/
Link to RAD webpage: https://www.ceric-eric.eu/lab-instrument/thermal-radiography-station/
Prompt-Gamma Neutron Activation Analysis, PGAA, Neutron imaging, archaeology, Materials Science, Heritage Science, Engineering
researchers
PhD students
scientists
archaeologists
Materials scientists
engineers
experts / scientists in heritage sciences
Introduction to DXRL: Deep X-ray Lithography at the Elettra synchrotron in Trieste
Introduction to DXRL by Benedetta Marmiroli:
Deep X-ray Lithography at the CERIC Austrian partner facility of the Graz University of Technology at the Elettra synchrotron in Trieste, Italy
---DXRL webpage on the CERIC website:...
Keywords: CERIC, Central European Research Infrastructure Consortium, deep x-ray lithography, DXRL
Resource type: video
Introduction to DXRL: Deep X-ray Lithography at the Elettra synchrotron in Trieste
https://youtu.be/Dm3vz0SwOp4
https://pan-training.eu/materials/introduction-to-dxrl-deep-x-ray-lithography-at-the-elettra-synchrotron-in-trieste
Introduction to DXRL by Benedetta Marmiroli:
Deep X-ray Lithography at the CERIC Austrian partner facility of the Graz University of Technology at the Elettra synchrotron in Trieste, Italy
---DXRL webpage on the CERIC website: https://www.ceric-eric.eu/lab-instrument/dynamic-light-scattering/
---DXRL webpage on the Elettra website: https://elettra.eu/elettra-beamlines/dxrl.html
CERIC, Central European Research Infrastructure Consortium, deep x-ray lithography, DXRL
researchers
scientists
engineers
CrystFEL tutorial
This tutorial covers most of the main steps of using CrystFEL, and is based on processing some freely available LCLS data. The aim of this page is to give an overall idea of how the programs fit together and equip you with the knowledge you need to get started with processing a serial...
Keywords: CrystFEL, data processing, crystallography, structural biology
Resource type: tutorial
CrystFEL tutorial
https://www.desy.de/~twhite/crystfel/tutorial.html
https://pan-training.eu/materials/crystfel-tutorial
This tutorial covers most of the main steps of using CrystFEL, and is based on processing some freely available LCLS data. The aim of this page is to give an overall idea of how the programs fit together and equip you with the knowledge you need to get started with processing a serial crystallography data set on your own.
CrystFEL, data processing, crystallography, structural biology
Photon Community
crystallography
Delivering data services to EOSC
Wiki page recording the ExPaNDS training workshop on data services for EOSC (06/04/2021)
Keywords: OAI-PMH, metadata, harvesting, SciCat, ICAT, B2FIND, OpenAIRE, research data, wp3-ExPaNDS
Resource type: wiki
Delivering data services to EOSC
https://github.com/ExPaNDS-eu/ExPaNDS/wiki/Delivering-data-services-to-EOSC
https://pan-training.eu/materials/delivering-data-services-to-eosc
Wiki page recording the ExPaNDS training workshop on data services for EOSC (06/04/2021)
OAI-PMH, metadata, harvesting, SciCat, ICAT, B2FIND, OpenAIRE, research data, wp3-ExPaNDS
data curator
research data scientist
Python Laser Image Visualization
Tool showing pictures from different cameras (directories) in a grid and a stepwise counter-based scroll functionality. Most of the layout and (future) filter options are defined by command line to allow an easy integration into an workflow based on CWL, OWL (or Knime). In future developments...
Keywords: Python, Laser, Visualization, Cameras, Laser Ion Acceleration, Qt5
Resource type: software, git
Python Laser Image Visualization
https://gitlab.hzdr.de/fwcc/data-management/user-project-documentation/laserviztool
https://pan-training.eu/materials/python-laser-image-visualization
Tool showing pictures from different cameras (directories) in a grid and a stepwise counter-based scroll functionality. Most of the layout and (future) filter options are defined by command line to allow an easy integration into an workflow based on CWL, OWL (or Knime). In future developments most of the parameters can be changed interactive and saved to a json file which can be used to describe the next workflow inputs, so that an interactive workflow development is possible.
Python, Laser, Visualization, Cameras, Laser Ion Acceleration, Qt5
PaN Community
Photon Community