Register training material Upload training material to Zenodo
26 materials found

Keywords: synchrotron  or Python  or data management 


Training materials on scientific Python programming and silx libraries.

This repository contains some training materials on scientific Python programming and silx libraries. General topics: * Introduction to Python and numpy * Software engineering tools and tips for Python silx trainings: * Features of the silx toolkit * Introduction to Fable Input/Output...

Keywords: Python, Silx, data analysis, data reduction, data visualisation

Training materials on scientific Python programming and silx libraries. https://pan-training.eu/materials/training-materials-on-scientific-python-programming-and-silx-libraries This repository contains some training materials on scientific Python programming and silx libraries. General topics: * Introduction to Python and numpy * Software engineering tools and tips for Python silx trainings: * Features of the silx toolkit * Introduction to Fable Input/Output (aka. fabio) library" Python, Silx, data analysis, data reduction, data visualisation
How to mint a DOI

How to create a DOI for a specific set of datasets using the ESRF data portal.

Keywords: doi, data management, data object identifier, mint, dataset, data management, open data, Open Science, ESRF data portal

How to mint a DOI https://pan-training.eu/materials/how-to-mint-a-doi How to create a DOI for a specific set of datasets using the ESRF data portal. doi, data management, data object identifier, mint, dataset, data management, open data, Open Science, ESRF data portal
How to share data and logbook with collaborators

How to share data and logbook with collaborators easily

Keywords: data management, open data, Open Science, logbook, sharing, ESRF data portal

How to share data and logbook with collaborators https://pan-training.eu/materials/how-to-share-data-and-logbook-with-collaborators How to share data and logbook with collaborators easily data management, open data, Open Science, logbook, sharing, ESRF data portal
Tomwer – add a python script

Tutorial on how user can add their own processing into the workflow through a python script (advanced usage).

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, Python, canvas

Resource type: video

Tomwer – add a python script https://pan-training.eu/materials/tomwer-add-a-python-script Tutorial on how user can add their own processing into the workflow through a python script (advanced usage). tomography tomography, tomotools, tomwer, nabu, Python, canvas
TANGO tutorials

Documentation and tutorials to understand what Tango Controls is, guide your first steps as a user, developer or administrator of Tango.

Keywords: synchrotron control, TANGO, c++, Python, tango-controls, arduino, scada

Resource type: documenation

TANGO tutorials https://pan-training.eu/materials/tango-tutorials Documentation and tutorials to understand what Tango Controls is, guide your first steps as a user, developer or administrator of Tango. synchrotron control, TANGO, c++, Python, tango-controls, arduino, scada
Video introduction to data management plans for PaN users

Video guide illustrating the essential steps of creating a data management plan for an experiment.

Keywords: data management, DMP

Resource type: video

Video introduction to data management plans for PaN users https://pan-training.eu/materials/video-introduction-to-data-management-plans-for-pan-users Video guide illustrating the essential steps of creating a data management plan for an experiment. data management, DMP PaN users researchers
ETH Lib4RI: Research Data Management – The Basics

Research data management best practices in the ETH Lib4RI, the Library for the Research Institutes within the ETH Domain: Eawag, Empa, PSI & WSL

Keywords: data catalogue, data management, metadata, SciCat

Resource type: slides

ETH Lib4RI: Research Data Management – The Basics https://pan-training.eu/materials/eth-lib4ri-research-data-management-the-basics Research data management best practices in the ETH Lib4RI, the Library for the Research Institutes within the ETH Domain: Eawag, Empa, PSI & WSL data catalogue, data management, metadata, SciCat research scientists postdocs PhD students ExPaNDS and PaNOSC project members PaN users PaN Community researchers
Active DMPs for Photon and Neutron RIs

This deliverable envisions an integrated aDMP system which supports the (semi-) automated generation of DMPs by maximising reuse of information generated during the research life-cycle and also aiming to support the scientists and other stakeholders by supporting information transfer....

Keywords: expands, wp2-ExPaNDS, DMP, data management plan, data management

Resource type: Document

Active DMPs for Photon and Neutron RIs https://pan-training.eu/materials/active-dmps-for-photon-and-neutron-ris This deliverable envisions an integrated aDMP system which supports the (semi-) automated generation of DMPs by maximising reuse of information generated during the research life-cycle and also aiming to support the scientists and other stakeholders by supporting information transfer. Therefore, a data model for aDMPs focusing on the integration of information that exists before a proposal is submitted and its life-cycle integration is introduced. It relates the data model also to the template created in PaNOSC. expands, wp2-ExPaNDS, DMP, data management plan, data management PaN Community
Full-field Tomography at PSI

This workflow has some details on the instrument the data is produced from (TOMCAT beamline) and the infrastructure PSI has concerning their data. If you are more interested in the science and want to reproduce the data and not bother with the surrounding details/context, please refer to the...

Keywords: synchrotron, imaging, Jupyter notebooks, Python, Pulmonary arterial hypertension

Resource type: workflow

Full-field Tomography at PSI https://pan-training.eu/materials/full-field-tomography-at-psi This workflow has some details on the instrument the data is produced from (TOMCAT beamline) and the infrastructure PSI has concerning their data. If you are more interested in the science and want to reproduce the data and not bother with the surrounding details/context, please refer to the Pulmonary arterial hypertension research workflow. Full-field Tomography at PSI Tomography datasets often present large volumes (100 GBs - few TBs) difficult to compress and transfer. The tomographic reconstruction is highly demanding on compute (GPU) and storage resources for the intermediate and/or final result. In addition, the optional image segmentation step may be demanding on computer memory. The offline analysis (after experiment) could be performed remotely by users at home making it attractive for deployment as a cloud-like use case. Finally, this technique is applied at many facilities and in different scientific domains - therefore a portable result is more useful. This entire process is illustrated with a typical experiment. synchrotron, imaging, Jupyter notebooks, Python, Pulmonary arterial hypertension research data scientist life scientists
Final recommendations for FAIR Photon and Neutron Data Management

The present deliverable pursues the work initiated in ExPaNDS deliverable 2.2, which established a common metadata framework for FAIR data generated in Photon and Neutron (PaN) facilities. The modalities of implementation of this framework across facilities are examined and current practices and...

Keywords: expands, wp2-ExPaNDS, FAIR, data management

Resource type: Document

Final recommendations for FAIR Photon and Neutron Data Management https://pan-training.eu/materials/final-recommendations-for-fair-photon-and-neutron-data-management The present deliverable pursues the work initiated in ExPaNDS deliverable 2.2, which established a common metadata framework for FAIR data generated in Photon and Neutron (PaN) facilities. The modalities of implementation of this framework across facilities are examined and current practices and tools for metadata capture, storage and exposure are highlighted. This work is also the occasion to examine the commonalities of the framework with other initiatives developed inside and outside ExPaNDS such as the common search API, the data catalogues (ExPaNDS WP3), the EOSC discovery platforms B2FIND and OpenAire as well as the NeXus data format. It also provides the reader with guidelines on current tools and schemata available to record provenance and digital preservation information. The essence of these discussions is summarised as a list of practical recommendations at the end. expands, wp2-ExPaNDS, FAIR, data management PaN Community
Workshop on Metadata Catalogues

Presentations from the Workshop on Metadata Catalogues, which took place virtually via Zoom on the 4th April 2022.

Keywords: data catalogue, SciCat, ICAT, expands, panet, PaNOSC, metadata, data management, data processing, wp3-ExPaNDS

Resource type: slides, video

Workshop on Metadata Catalogues https://pan-training.eu/materials/workshop-on-metadata-catalogues Presentations from the Workshop on Metadata Catalogues, which took place virtually via Zoom on the 4th April 2022. data catalogue, SciCat, ICAT, expands, panet, PaNOSC, metadata, data management, data processing, wp3-ExPaNDS data curator data managers research data engineer ExPaNDS and PaNOSC project members PaN users PaN Community
Outreach videos about experiments done at ALBA

Here you will find a series of videos about the different applications of synchrotron light. Videos are in Spanish and Catalan, although subtitles are available in English, Catalan and Spanish. Its aim is to transmit in a simple and understandable way a selection of the applications that can...

Keywords: synchrotron, synchrotron light, applications

Resource type: video

Outreach videos about experiments done at ALBA https://pan-training.eu/materials/outreach-videos-about-experiments-done-at-alba Here you will find a series of videos about the different applications of synchrotron light. Videos are in Spanish and Catalan, although subtitles are available in English, Catalan and Spanish. Its aim is to transmit in a simple and understandable way a selection of the applications that can have the synchrotron light in different scientific fields: health, food, environment, cultural heritage, etc. These videos are part of the project FCT-15-9828 "Bringing science to society – Outreach science program of the ALBA Synchrotron", funded by the Spanish Foundation for Science and Technology (FECYT) - Ministry of Economy and Competitiveness and the Foundation Obra Social "la Caixa". synchrotron, synchrotron light, applications general public
Tour of MAX IV accelerators with professor Sverker Werin

Join us in the tour of MAX IV Laboratory's accelerators hosted by Sverker Werin, professor in accelerator physics at Lund University and MAX IV. The electron guns 00:24 Along the linear accelerator 2:59 The bunch compressor 4:42 The 1.5 GeV ring extraction point 5:47 The modulators and...

Keywords: synchrotron, accelerator physics

Resource type: video

Tour of MAX IV accelerators with professor Sverker Werin https://pan-training.eu/materials/tour-of-max-iv-accelerators-with-professor-sverker-werin Join us in the tour of MAX IV Laboratory's accelerators hosted by Sverker Werin, professor in accelerator physics at Lund University and MAX IV. The electron guns 00:24 Along the linear accelerator 2:59 The bunch compressor 4:42 The 1.5 GeV ring extraction point 5:47 The modulators and klystrons 7:03 In the 3.0 GeV storage ring 8:13 The undulators in the 3.0 GeV rings 10:50 The start of the photon beam 11:57 Topping up energy in the storage ring 12:42 In the MAX IV accelerator exhibition 13:39 synchrotron, accelerator physics PaN Community beamline users
Learning pack: The synchrotron and its lights

The machine and beamlines, optical devices, magnetism vacuum and information about the analytic techniques applied on a synchrotron and through examples of studies carried out at the synchrotron SOLEIL.

Scientific topics: extended x-ray absorption fine structure, absorption spectroscopy

Keywords: synchrotron, optics, monochromators, magnetic fields, ultra-high vacuum, applications, xanes & exafs

Resource type: Document

Learning pack: The synchrotron and its lights https://pan-training.eu/materials/learning-pack-the-synchrotron-and-its-lights The machine and beamlines, optical devices, magnetism vacuum and information about the analytic techniques applied on a synchrotron and through examples of studies carried out at the synchrotron SOLEIL. extended x-ray absorption fine structure absorption spectroscopy synchrotron, optics, monochromators, magnetic fields, ultra-high vacuum, applications, xanes & exafs general public masters students
Learning pack: Optics

What optic devices are used to direct light, concentrate it and select a wavelength? Do they all involve the same technology? An educational introduction to optical instruments. Poster "Optical instruments suited to the light of the SOLEIL"

Keywords: synchrotron, optical instruments

Resource type: Poster

Learning pack: Optics https://pan-training.eu/materials/learning-pack-optics What optic devices are used to direct light, concentrate it and select a wavelength? Do they all involve the same technology? An educational introduction to optical instruments. Poster "Optical instruments suited to the light of the SOLEIL" synchrotron, optical instruments general public
Synchrotron, a light source for research

PART 1: SOLEIL, a light source for research How does a synchrotron work? Who comes here to perform experiments? Find some answers in this illustrated video. PART 2: The lights of SOLEIL What lights are used at SOLEIL? Why such a diversity? Find some answers in this illustrated video, very...

Keywords: synchrotron, Soleil

Resource type: video

Synchrotron, a light source for research https://pan-training.eu/materials/synchrotron-a-light-source-for-research PART 1: SOLEIL, a light source for research How does a synchrotron work? Who comes here to perform experiments? Find some answers in this illustrated video. PART 2: The lights of SOLEIL What lights are used at SOLEIL? Why such a diversity? Find some answers in this illustrated video, very accessible and didactic. PART 3: When light explores matter What happens when light is shone at a sample? What techniques and applications are available at SOLEIL? Find some answers in this illustrated video, very accessible and didactic. Find more videos on our website https://www.synchrotron-soleil.fr/en/videos synchrotron, Soleil general public
FTIR Microscopy with Synchrotron Radiation

FTIR Microscopy with Synchrotron Radiation by Dr. Lisa Vaccari from CERIC’s Italian Partner Facility, Elettra Synchrotron in Trieste

Keywords: synchrotron, Elettra synchrotron, synchrotron beamline, FTIR Microscopy, Photon science

Resource type: video

FTIR Microscopy with Synchrotron Radiation https://pan-training.eu/materials/ftir-microscopy-with-synchrotron-radiation FTIR Microscopy with Synchrotron Radiation by Dr. Lisa Vaccari from CERIC’s Italian Partner Facility, Elettra Synchrotron in Trieste synchrotron, Elettra synchrotron, synchrotron beamline, FTIR Microscopy, Photon science PaN Community PaN users PhD students
Soft X-ray Imaging and XRF

Soft X-ray Imaging and XRF by Dr. Alessandra Gianoncelli from CERIC’s Italian Partner Facility, Elettra Synchrotron in Trieste

Keywords: Soft X-ray Imaging, X-ray fluorescence, XRF, synchrotron, synchrotron beamline, Elettra synchrotron, Photon science

Resource type: video

Soft X-ray Imaging and XRF https://pan-training.eu/materials/soft-x-ray-imaging-and-xrf Soft X-ray Imaging and XRF by Dr. Alessandra Gianoncelli from CERIC’s Italian Partner Facility, Elettra Synchrotron in Trieste Soft X-ray Imaging, X-ray fluorescence, XRF, synchrotron, synchrotron beamline, Elettra synchrotron, Photon science PaN Community PaN users PhD students
Introduction to Powder Diffraction

Introduction to Powder Diffraction by Dr. Jasper Plaisier from CERIC’s Italian Partner Facility, Elettra Synchrotron in Trieste

Scientific topics: powder diffraction

Keywords: Powder Diffraction, synchrotron, Photon science, synchrotron beamline, Elettra synchrotron

Resource type: video

Introduction to Powder Diffraction https://pan-training.eu/materials/introduction-to-powder-diffraction Introduction to Powder Diffraction by Dr. Jasper Plaisier from CERIC’s Italian Partner Facility, Elettra Synchrotron in Trieste powder diffraction Powder Diffraction, synchrotron, Photon science, synchrotron beamline, Elettra synchrotron PaN Community PaN users PhD students
X-ray Diffraction: Macromolecular Crystallography

X-ray Diffraction: Macromolecular Crystallography by Dr. Annie Heroux from CERIC’s Italian Partner Facility, Elettra Synchrotron in Trieste

Keywords: X-ray Diffraction, Macromolecular Crystallography, synchrotron, Photon science, synchrotron beamline, Elettra synchrotron

X-ray Diffraction: Macromolecular Crystallography https://pan-training.eu/materials/x-ray-diffraction-macromolecular-crystallography X-ray Diffraction: Macromolecular Crystallography by Dr. Annie Heroux from CERIC’s Italian Partner Facility, Elettra Synchrotron in Trieste X-ray Diffraction, Macromolecular Crystallography, synchrotron, Photon science, synchrotron beamline, Elettra synchrotron PaN Community PaN users PhD students
Introduction to X-ray Imaging

Introduction to X-ray Imaging by Dr. Giuliana Tromba from CERIC’s Italian Partner Facility, Elettra Synchrotron in Trieste

Scientific topics: x-ray imaging

Keywords: X-ray Imaging, Photon science, synchrotron, synchrotron beamline, Elettra synchrotron

Resource type: video

Introduction to X-ray Imaging https://pan-training.eu/materials/introduction-to-x-ray-imaging Introduction to X-ray Imaging by Dr. Giuliana Tromba from CERIC’s Italian Partner Facility, Elettra Synchrotron in Trieste x-ray imaging X-ray Imaging, Photon science, synchrotron, synchrotron beamline, Elettra synchrotron PaN users PaN Community PhD students
Introduction to X-ray Spectroscopy & Microscopy

Introduction to X-ray Spectroscopy & Microscopy by Dr. Andrea Locatelli from CERIC’s Italian Partner Facility, Elettra Synchrotron in Trieste

Keywords: X-ray Spectroscopy, X-ray Microscopy, Photon science, synchrotron, synchrotron beamline, Elettra synchrotron

Resource type: video

Introduction to X-ray Spectroscopy & Microscopy https://pan-training.eu/materials/introduction-to-x-ray-spectroscopy-microscopy Introduction to X-ray Spectroscopy & Microscopy by Dr. Andrea Locatelli from CERIC’s Italian Partner Facility, Elettra Synchrotron in Trieste X-ray Spectroscopy, X-ray Microscopy, Photon science, synchrotron, synchrotron beamline, Elettra synchrotron PaN users PaN Community PhD students
Introduction to X/N Matter Interactions

Introduction to X/N Matter Interactions by Dr. Maya Kisknova from CERIC’s Italian Partner Facility, Elettra Synchrotron in Trieste

Keywords: synchrotron, Elettra synchrotron, Photon science

Resource type: video

Introduction to X/N Matter Interactions https://pan-training.eu/materials/introduction-to-x-n-matter-interactions Introduction to X/N Matter Interactions by Dr. Maya Kisknova from CERIC’s Italian Partner Facility, Elettra Synchrotron in Trieste synchrotron, Elettra synchrotron, Photon science PaN Community PaN users PhD students
Introduction to Soft X-ray Transmission and Emission Microscope, TwinMic at Elettra Sincrotrone Trieste

Introduction to the TwinMic Beamline: Soft X-ray Transmission and Emission Microscope at the CERIC Italian partner facility, Elettra Sincrotrone Trieste ---TwinMic beamline webpage in the CERIC website:...

Keywords: soft X-ray Microscopy, synchrotron, Central European Research Infrastructure Consortium, CERIC, synchrotron beamline, microscopy, electrochemistry, battery research, Heritage Science, Elettra synchrotron, Elettra Sincrotrone Trieste, life sciences, microscope

Resource type: video

Introduction to Soft X-ray Transmission and Emission Microscope, TwinMic at Elettra Sincrotrone Trieste https://pan-training.eu/materials/introduction-to-soft-x-ray-transmission-and-emission-microscope-twinmic-at-elettra-sincrotrone-trieste Introduction to the TwinMic Beamline: Soft X-ray Transmission and Emission Microscope at the CERIC Italian partner facility, Elettra Sincrotrone Trieste ---TwinMic beamline webpage in the CERIC website: https://www.ceric-eric.eu/lab-instrument/soft-x-ray-transmission-and-emission-microscope/ ---TwinMic beamline webpage in the Elettra website: https://www.elettra.trieste.it/elettra-beamlines/twinmic.html soft X-ray Microscopy, synchrotron, Central European Research Infrastructure Consortium, CERIC, synchrotron beamline, microscopy, electrochemistry, battery research, Heritage Science, Elettra synchrotron, Elettra Sincrotrone Trieste, life sciences, microscope researchers scientists PhD students chemists physicists biologists
The FAIR Experiment

Video recording of the workshop exploring the FAIR Experiment at PaN facilities (02/10/2020)

Keywords: FAIR, research data, data management, metadata, wp2-ExPaNDS

Resource type: video

The FAIR Experiment https://pan-training.eu/materials/the-fair-experiment Video recording of the workshop exploring the FAIR Experiment at PaN facilities (02/10/2020) FAIR, research data, data management, metadata, wp2-ExPaNDS facility staff instrument scientist
Python Laser Image Visualization

Tool showing pictures from different cameras (directories) in a grid and a stepwise counter-based scroll functionality. Most of the layout and (future) filter options are defined by command line to allow an easy integration into an workflow based on CWL, OWL (or Knime). In future developments...

Keywords: Python, Laser, Visualization, Cameras, Laser Ion Acceleration, Qt5

Resource type: software, git

Python Laser Image Visualization https://pan-training.eu/materials/python-laser-image-visualization Tool showing pictures from different cameras (directories) in a grid and a stepwise counter-based scroll functionality. Most of the layout and (future) filter options are defined by command line to allow an easy integration into an workflow based on CWL, OWL (or Knime). In future developments most of the parameters can be changed interactive and saved to a json file which can be used to describe the next workflow inputs, so that an interactive workflow development is possible. Python, Laser, Visualization, Cameras, Laser Ion Acceleration, Qt5 PaN Community Photon Community