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Licence: Open Data Commons Attributi...  or MIT License 

Full-field Tomography at PSI

This workflow has some details on the instrument the data is produced from (TOMCAT beamline) and the infrastructure PSI has concerning their data. If you are more interested in the science and want to reproduce the data and not bother with the surrounding details/context, please refer to the...

Keywords: synchrotron, imaging, Jupyter notebooks, Python, Pulmonary arterial hypertension

Resource type: workflow

Full-field Tomography at PSI https://pan-training.eu/materials/full-field-tomography-at-psi This workflow has some details on the instrument the data is produced from (TOMCAT beamline) and the infrastructure PSI has concerning their data. If you are more interested in the science and want to reproduce the data and not bother with the surrounding details/context, please refer to the Pulmonary arterial hypertension research workflow. Full-field Tomography at PSI Tomography datasets often present large volumes (100 GBs - few TBs) difficult to compress and transfer. The tomographic reconstruction is highly demanding on compute (GPU) and storage resources for the intermediate and/or final result. In addition, the optional image segmentation step may be demanding on computer memory. The offline analysis (after experiment) could be performed remotely by users at home making it attractive for deployment as a cloud-like use case. Finally, this technique is applied at many facilities and in different scientific domains - therefore a portable result is more useful. This entire process is illustrated with a typical experiment. synchrotron, imaging, Jupyter notebooks, Python, Pulmonary arterial hypertension research data scientist life scientists
JupyLabBook

A Jupyter Notebook used as an interactive lab book on the beamline SIRIUS (SOLEIL Synchrotron).

Keywords: labbook, jupyter notebook, SIRIUS beamline

Resource type: git, jupyter notebook

JupyLabBook https://pan-training.eu/materials/jupylabbook A Jupyter Notebook used as an interactive lab book on the beamline SIRIUS (SOLEIL Synchrotron). labbook, jupyter notebook, SIRIUS beamline
JupyFluo

JupyFluo is a Jupyter Notebook to analyze X-Ray Fluorescence (XRF) experiments on the beamline SIRIUS at the synchrotron SOLEIL. The notebook should be first set up by an Expert following the instructions in the "Expert" section. User can then follow the guidelines in the "User" section to start...

Scientific topics: x-ray fluorescence

Keywords: X-ray fluorescence, jupyter notebook, SIRIUS beamline

Resource type: git, jupyter notebook

JupyFluo https://pan-training.eu/materials/jupyfluo JupyFluo is a Jupyter Notebook to analyze X-Ray Fluorescence (XRF) experiments on the beamline SIRIUS at the synchrotron SOLEIL. The notebook should be first set up by an Expert following the instructions in the "Expert" section. User can then follow the guidelines in the "User" section to start using the notebook. Please note that the notebook is currently in development. As such, be skeptical about any unexpected results. Any feedback on the notebook or the code is welcome. x-ray fluorescence X-ray fluorescence, jupyter notebook, SIRIUS beamline
h5web: stand-alone, web-based viewer to explore HDF5 files

H5Web is a collection of React components to visualize and explore data. It consists of two packages: - @h5web/lib: visualization components built with react-three-fiber. - @h5web/app: a stand-alone, web-based viewer to explore HDF5 files.

Keywords: hdf5, Visualization

Resource type: tool

h5web: stand-alone, web-based viewer to explore HDF5 files https://pan-training.eu/materials/h5web-stand-alone-web-based-viewer-to-explore-hdf5-files H5Web is a collection of React components to visualize and explore data. It consists of two packages: - @h5web/lib: visualization components built with react-three-fiber. - @h5web/app: a stand-alone, web-based viewer to explore HDF5 files. hdf5, Visualization
ExPaNDS D5.4 : PaN Training Catalogue Demo Video

Demo video demonstrating the concept and the features of the PaN Training Catalogue as part of ExPaNDS Deliverable 5.4

Keywords: catalogue, expands, deliverable, wp5-ExPaNDS

Resource type: video

ExPaNDS D5.4 : PaN Training Catalogue Demo Video https://pan-training.eu/materials/pan-training-catalogue-demo-video-expands-d5-4 Demo video demonstrating the concept and the features of the PaN Training Catalogue as part of ExPaNDS Deliverable 5.4 catalogue, expands, deliverable, wp5-ExPaNDS
Python Laser Image Visualization

Tool showing pictures from different cameras (directories) in a grid and a stepwise counter-based scroll functionality. Most of the layout and (future) filter options are defined by command line to allow an easy integration into an workflow based on CWL, OWL (or Knime). In future developments...

Keywords: Python, Laser, Visualization, Cameras, Laser Ion Acceleration, Qt5

Resource type: software, git

Python Laser Image Visualization https://pan-training.eu/materials/python-laser-image-visualization Tool showing pictures from different cameras (directories) in a grid and a stepwise counter-based scroll functionality. Most of the layout and (future) filter options are defined by command line to allow an easy integration into an workflow based on CWL, OWL (or Knime). In future developments most of the parameters can be changed interactive and saved to a json file which can be used to describe the next workflow inputs, so that an interactive workflow development is possible. Python, Laser, Visualization, Cameras, Laser Ion Acceleration, Qt5 PaN Community Photon Community