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Final recommendations for FAIR Photon and Neutron Data Management

The present deliverable pursues the work initiated in ExPaNDS deliverable 2.2, which established a common metadata framework for FAIR data generated in Photon and Neutron (PaN) facilities. The modalities of implementation of this framework across facilities are examined and current practices and...

Keywords: expands, wp2-ExPaNDS, FAIR, data management

Resource type: Document

Final recommendations for FAIR Photon and Neutron Data Management https://pan-training.eu/materials/final-recommendations-for-fair-photon-and-neutron-data-management The present deliverable pursues the work initiated in ExPaNDS deliverable 2.2, which established a common metadata framework for FAIR data generated in Photon and Neutron (PaN) facilities. The modalities of implementation of this framework across facilities are examined and current practices and tools for metadata capture, storage and exposure are highlighted. This work is also the occasion to examine the commonalities of the framework with other initiatives developed inside and outside ExPaNDS such as the common search API, the data catalogues (ExPaNDS WP3), the EOSC discovery platforms B2FIND and OpenAire as well as the NeXus data format. It also provides the reader with guidelines on current tools and schemata available to record provenance and digital preservation information. The essence of these discussions is summarised as a list of practical recommendations at the end. expands, wp2-ExPaNDS, FAIR, data management PaN Community
Advanced infrastructure for PIDs in Photon and Neutron RIs

This deliverable accumulates results of ExPaNDS works on the topic of persistent identifiers (PIDs) in facilities research. It refers to the substantial effort of persistent identifiers adoption in facilities and in a larger research ecosystem, and provides a general guidance, as well as...

Keywords: persistent identifiers, wp2-ExPaNDS

Resource type: project deliverable

Advanced infrastructure for PIDs in Photon and Neutron RIs https://pan-training.eu/materials/advanced-infrastructure-for-pids-in-photon-and-neutron-ris This deliverable accumulates results of ExPaNDS works on the topic of persistent identifiers (PIDs) in facilities research. It refers to the substantial effort of persistent identifiers adoption in facilities and in a larger research ecosystem, and provides a general guidance, as well as prioritised recommendations for research information practitioners who consider going beyond the current levels of persistent identifiers adoption by photon and neutron research infrastructures. persistent identifiers, wp2-ExPaNDS facility staff scientists
Workshop on Metadata Catalogues

Presentations from the Workshop on Metadata Catalogues, which took place virtually via Zoom on the 4th April 2022.

Keywords: data catalogue, SciCat, ICAT, expands, panet, PaNOSC, metadata, data management, data processing, wp3-ExPaNDS

Resource type: slides, video

Workshop on Metadata Catalogues https://pan-training.eu/materials/workshop-on-metadata-catalogues Presentations from the Workshop on Metadata Catalogues, which took place virtually via Zoom on the 4th April 2022. data catalogue, SciCat, ICAT, expands, panet, PaNOSC, metadata, data management, data processing, wp3-ExPaNDS data curator data managers research data engineer ExPaNDS and PaNOSC project members PaN users PaN Community
Report on status, gap analysis and roadmap towards harmonised and federated metadata catalogues for EU national Photon and Neutron RIs

Report on status, gap analysis and roadmap towards harmonised and federated metadata catalogues for EU national Photon and Neutron RIs

Keywords: expands, D3.1, wp3-ExPaNDS

Resource type: Document

Report on status, gap analysis and roadmap towards harmonised and federated metadata catalogues for EU national Photon and Neutron RIs https://pan-training.eu/materials/report-on-status-gap-analysis-and-roadmap-towards-harmonised-and-federated-metadata-catalogues-for-eu-national-photon-and-neutron-ris Report on status, gap analysis and roadmap towards harmonised and federated metadata catalogues for EU national Photon and Neutron RIs expands, D3.1, wp3-ExPaNDS ExPaNDS and PaNOSC project members
Demonstrate ICAT and SciCat released with APIs compatible with ExPaNDS federated EOSC services

Demonstration release of ICAT and SciCat with APIs compatible with ExPaNDS federated EOSC services and its connection to milestone Metadata catalogue as EOSC service in the domain of photon and neutron (PaN) science

Keywords: D3.3, wp3-ExPaNDS

Demonstrate ICAT and SciCat released with APIs compatible with ExPaNDS federated EOSC services https://pan-training.eu/materials/demonstrate-icat-and-scicat-released-with-apis-compatible-with-expands-federated-eosc-services Demonstration release of ICAT and SciCat with APIs compatible with ExPaNDS federated EOSC services and its connection to milestone Metadata catalogue as EOSC service in the domain of photon and neutron (PaN) science D3.3, wp3-ExPaNDS
ExPaNDS Guidance Note: Key Policy Elements within a Photon and Neutron Research Infrastructure Data Policy Framework (revised - final version)

The text of this ExPaNDS Guidance Note is extracted from ExPaNDS deliverable [D2.3: Final data policy framework for Photon and Neutron RIs](https://doi.org/10.5281/zenodo.5205824). The Guidance Note covers the 21 elements that comprise the final version of the ExPaNDS data policy framework. These...

Keywords: data policy, expands, FAIR, wp2-ExPaNDS

Resource type: Document

ExPaNDS Guidance Note: Key Policy Elements within a Photon and Neutron Research Infrastructure Data Policy Framework (revised - final version) https://pan-training.eu/materials/expands-guidance-note-key-policy-elements-within-a-photon-and-neutron-research-infrastructure-data-policy-framework-revised-final-version The text of this ExPaNDS Guidance Note is extracted from ExPaNDS deliverable [D2.3: Final data policy framework for Photon and Neutron RIs](https://doi.org/10.5281/zenodo.5205824). The Guidance Note covers the 21 elements that comprise the final version of the ExPaNDS data policy framework. These elements fall under nine broad themes: 1. General drivers and principles 2. Roles and responsibilities 3. Scope 4. Enabling FAIR data 5. Necessary restrictions to data sharing 6. Availability of infrastructure and responsibility for costs 7. Data management planning requirements 8. Recognition and reward for data usage 9. Reporting requirements, compliance monitoring, and any possible sanctions The Guidance Note is intended as a short-form, ready-access tool for policy makers working on data policy within Photon and Neutron Research Infrastructures. For additional context around the development of the ExPaNDS data policy framework, see the D2.3 deliverable and its earlier, draft version [D2.1: Draft extended data policy framework for photon and neutron RIs](https://doi.org/10.5281/zenodo.4014811). data policy, expands, FAIR, wp2-ExPaNDS
2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021)

Recording of the "2nd PaNOSC and ExPaNDS PaN EOSC Symposium" that happened on 26th October 2021.

Keywords: expands, EOSC, PaNOSC, FAIR, symposium, wp5-ExPaNDS

Resource type: video

2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021) https://pan-training.eu/materials/2nd-panosc-and-expands-pan-eosc-symposium-october-2021 Recording of the "2nd PaNOSC and ExPaNDS PaN EOSC Symposium" that happened on 26th October 2021. expands, EOSC, PaNOSC, FAIR, symposium, wp5-ExPaNDS PaN Community ExPaNDS and PaNOSC project members
DOI, FAIR and MX COVID-19 use case

Frank von Delft presents: DOI, FAIR and MX COVID-19 use case at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).

Keywords: COVID research, FAIR, fragalysis, drug development, XChem, PDB, zenodo, wp5-ExPaNDS

Resource type: video, slides

DOI, FAIR and MX COVID-19 use case https://pan-training.eu/materials/doi-fair-and-mx-covid-19-use-case Frank von Delft presents: DOI, FAIR and MX COVID-19 use case at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021). COVID research, FAIR, fragalysis, drug development, XChem, PDB, zenodo, wp5-ExPaNDS
Machine Learning-based Spectra Classification

Yue Sun presents: Machine Learning-based Spectra Classification at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).

Scientific topics: spectroscopy

Keywords: machine learning, XFEL, FAIR, large dataset, NeXus, spectroscopy, wp5-ExPaNDS

Resource type: video, slides

Machine Learning-based Spectra Classification https://pan-training.eu/materials/machine-learning-based-spectra-classification Yue Sun presents: Machine Learning-based Spectra Classification at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021). spectroscopy machine learning, XFEL, FAIR, large dataset, NeXus, spectroscopy, wp5-ExPaNDS PaN Community scientists
TELBE data analysis workflow and the PaN training platform UX

Jan-Christoph Deinert presents: TELBE data analysis workflow and the PaN training platform UX at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).

Keywords: training platform, workflow, TELBE, FAIR, data correction, wp5-ExPaNDS

Resource type: video, slides

TELBE data analysis workflow and the PaN training platform UX https://pan-training.eu/materials/telbe-data-analysis-workflow-and-the-pan-training-platform-ux Jan-Christoph Deinert presents: TELBE data analysis workflow and the PaN training platform UX at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021). training platform, workflow, TELBE, FAIR, data correction, wp5-ExPaNDS
Neutron diffraction from Boro-carbon for efficient structural analysis and defect detection

Mousumi Upadhyay Kahaly presents: Neutron diffraction from Boro-carbon for efficient structural analysis and defect detection at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).

Scientific topics: neutron diffraction, inelastic scattering

Keywords: McStas, simulation, inelastic neutron scattering, ab-initio, neutron scattering, neutron, neutron diffraction, defect detection, structural analysis, wp5-ExPaNDS

Resource type: video, slides

Neutron diffraction from Boro-carbon for efficient structural analysis and defect detection https://pan-training.eu/materials/neutron-diffraction-from-boro-carbon-for-efficient-structural-analysis-and-defect-detection Mousumi Upadhyay Kahaly presents: Neutron diffraction from Boro-carbon for efficient structural analysis and defect detection at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021). neutron diffraction inelastic scattering McStas, simulation, inelastic neutron scattering, ab-initio, neutron scattering, neutron, neutron diffraction, defect detection, structural analysis, wp5-ExPaNDS PaN Community scientists
Tomography Case Study

Kamel Madi presents: Tomography Case Study at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).

Keywords: tomography, pid, doi, FAIR, large dataset, 3Dmagination, wp5-ExPaNDS

Resource type: video, slides

Tomography Case Study https://pan-training.eu/materials/tomography-case-study Kamel Madi presents: Tomography Case Study at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021). tomography, pid, doi, FAIR, large dataset, 3Dmagination, wp5-ExPaNDS
Describe data by scripts for future reuse

Petr Čermák presents: Describe data by scripts for future reuse at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).

Keywords: metadata, open data, FAIR, figshare, binder, data processing, wp5-ExPaNDS

Resource type: video, slides

Describe data by scripts for future reuse https://pan-training.eu/materials/describe-data-by-scripts-for-future-reuse Petr Čermák presents: Describe data by scripts for future reuse at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021). metadata, open data, FAIR, figshare, binder, data processing, wp5-ExPaNDS
Draft recommendations for FAIR Photon and Neutron Data Management

ExPaNDS WP2 has the objective of Enabling FAIR Data, providing guidelines, recommendation and practical experience to the project and the wider PaN community on the best practise in generating FAIR experimental data for National RIs. In order for the facility to deliver experimental data “FAIR at...

Keywords: FAIR, metadata, expands, experimental lifecycle, wp2-ExPaNDS

Resource type: Document

Draft recommendations for FAIR Photon and Neutron Data Management https://pan-training.eu/materials/draft-recommendations-for-fair-photon-and-neutron-data-management ExPaNDS WP2 has the objective of Enabling FAIR Data, providing guidelines, recommendation and practical experience to the project and the wider PaN community on the best practise in generating FAIR experimental data for National RIs. In order for the facility to deliver experimental data “FAIR at the point of leaving the facility”, the infrastructure systems and procedures involved in the facilities experimental lifecycle should be coordinated to construct and maintain the FAIRness of that data. In particular, at each stage in the experimental lifecycle, metadata and contextual information should be collected (automatically and manually) to form as complete a record as possible of the experiment so that that data can be FAIR. In this report, we give an analysis of the metadata that should be generated and recorded at each stage of the lifecycle and consider its contribution to making that data FAIR. This delivers a prioritization which we use to determine which metadata should be collected. We use that prioritization to make a series of recommendations on the types of metadata that should be collected at each stage. These recommendations give a framework for setting standards for common metadata formats and provide a basis for assessing the FAIRness of data generated by facilities. Further work will develop these draft recommendations into our final recommendations for common metadata formats and use of metadata in practice. FAIR, metadata, expands, experimental lifecycle, wp2-ExPaNDS PaN Community ExPaNDS and PaNOSC project members
Metadata Catalogue Release

Self-contained, stand-alone metadata catalogue release that facilities can download to test/try and play with.

Keywords: ICAT, SciCat, PaNOSC, data catalogue, expands, wp3-ExPaNDS

Resource type: docker, docker-compose, software, git

Metadata Catalogue Release https://pan-training.eu/materials/metadata-catalogue-release Self-contained, stand-alone metadata catalogue release that facilities can download to test/try and play with. ICAT, SciCat, PaNOSC, data catalogue, expands, wp3-ExPaNDS PaN Community ExPaNDS and PaNOSC project members engineers research data engineer
ExPaNDS mapping dcat ontology and Nexus

Different communities have developed their terminology and are maintaining their metadata schemata or lists of vocabulary. In order to facilitate sharing of data across communities and allow collaboration between heterogeneous systems, interoperability of these vocabularies is required. In ...

Keywords: expands, ontology, mapping, NeXus, DCAT, semantic integration, wp3-ExPaNDS

Resource type: git, tool

ExPaNDS mapping dcat ontology and Nexus https://pan-training.eu/materials/expands-mapping-dcat-ontology-and-nexus Different communities have developed their terminology and are maintaining their metadata schemata or lists of vocabulary. In order to facilitate sharing of data across communities and allow collaboration between heterogeneous systems, interoperability of these vocabularies is required. In order to increase data interoperability and enable data integration, these vocabularies need to be semantically integrated with other vocabularies and their terms have to be aligned. This enables the development of a common shared vocabulary. expands, ontology, mapping, NeXus, DCAT, semantic integration, wp3-ExPaNDS PaN Community
ExPaNDS Photon and Neutron Experimental Techniques (PaNET) ontology

The Photon and Neutron Experimental Technique (PaNET) ontology provides a taxonomy of experimental techniques relevant for the Photon and Neutron (PaN) community. This ontology is being developed as part of the Work Package 3 on EOSC Data Catalogue Services for PaN national Research...

Keywords: panet, expands, ontology, experimental techniques, wp3-ExPaNDS

Resource type: git, tool

ExPaNDS Photon and Neutron Experimental Techniques (PaNET) ontology https://pan-training.eu/materials/expands-photon-and-neutron-experimental-techniques-panet-ontology The Photon and Neutron Experimental Technique (PaNET) ontology provides a taxonomy of experimental techniques relevant for the Photon and Neutron (PaN) community. This ontology is being developed as part of the Work Package 3 on EOSC Data Catalogue Services for PaN national Research Infrastructures of the ExPaNDS project. The ontology allows to add semantic tags to datasets, and other related research objects, to indicate the experimental technique(s) that was (or were) used to create them. panet, expands, ontology, experimental techniques, wp3-ExPaNDS PaN Community
ExPaNDS D3.2: Ontologies v1.0

We present ontologies for the domain of photon and neutron (PaN) science. With the primary goal of supporting PaN FAIR data catalogue services, we have developed three ontologies: PaN experimental techniques (PaNET), an ontology of NeXus definitions (NeXusOntology), and a semantic integration...

Keywords: expands, ontology, EOSC, Photon science, experimental techniques, Neutron science, deliverable, D3.2, wp3-ExPaNDS

Resource type: Document

ExPaNDS D3.2: Ontologies v1.0 https://pan-training.eu/materials/expands-d3-2-ontologies We present ontologies for the domain of photon and neutron (PaN) science. With the primary goal of supporting PaN FAIR data catalogue services, we have developed three ontologies: PaN experimental techniques (PaNET), an ontology of NeXus definitions (NeXusOntology), and a semantic integration ontology for the PaN domain (PaNmapping). The ontologies are presented as initial versions, supported by community development workflows. The work represents deliverable D3.2 of the Horizon 2020 ExPaNDS project. expands, ontology, EOSC, Photon science, experimental techniques, Neutron science, deliverable, D3.2, wp3-ExPaNDS
ExPaNDS D2.3: Final data policy framework for Photon and Neutron RIs

ExPaNDS deliverable D2.3: Final data policy framework for photon and neutron RIs, considers how data policies for research infrastructures providing photon and neutron facilities should be framed, in particular in the light of supporting open science and FAIR data. It builds on and revises the...

Keywords: expands, data policy, wp2-ExPaNDS

Resource type: Document

ExPaNDS D2.3: Final data policy framework for Photon and Neutron RIs https://pan-training.eu/materials/expands-d2-3-final-data-policy-framework-for-photon-and-neutron-ris ExPaNDS deliverable D2.3: Final data policy framework for photon and neutron RIs, considers how data policies for research infrastructures providing photon and neutron facilities should be framed, in particular in the light of supporting open science and FAIR data. It builds on and revises the initial policy framework presented in ExPaNDS deliverable D2.1: Draft extended data policy framework for photon and neutron RIs.To produce the final, revised version of our data policy framework, ExPaNDS undertook a series of detailed consultation meetings with all ten of our partner PaN RIs. Drawing extensively on quotes from the write ups of those conversations, this report presents the themes that emerged from the consultation, focusing especially on those that featured most often and most strongly.Based on the consultation feedback, we present a revised version of the ExPaNDS data policy framework, which now proposes 21 elements for RIs to consider when formulating data policy.Overall, the consultation provided an opportunity to engage deeply in discussion with ExPaNDS partners about data policy and policy making. The consultation feedback and the level of engagement with the consultation process itself highlight ExPaNDS partners’ strong interest in data policy. There is a clear recognition that having an appropriate data policy is fundamental to supporting good research data management. While some differing views exist, ExPaNDS partners express consensus on key fundamental aspects of the data policy framework, especially the importance of a high level commitment to FAIR data. There is also the strong recognition that flexibility in a data policy framework is vital to accommodating the diversity found across national PaN RIs.As well as incorporating the final version ExPaNDS data policy framework as a key output, our report concludes with two overarching points:Data policy diversity will remain across ExPaNDS partner facilitiesData policy is a powerful and important tool for national PaN RIs.It is clear from the consultation feedback that the ExPaNDS data policy framework is already having an impact on facilities’ plans for future work, especially around ensuring that key implementations are in place to support FAIR data. Further work within ExPaNDS, for example, around PIDs, metadata, and FAIR assessment, will provide guidance to support these activities. expands, data policy, wp2-ExPaNDS
The FAIR Experiment

Video recording of the workshop exploring the FAIR Experiment at PaN facilities (02/10/2020)

Keywords: FAIR, research data, data management, metadata, wp2-ExPaNDS

Resource type: video

The FAIR Experiment https://pan-training.eu/materials/the-fair-experiment Video recording of the workshop exploring the FAIR Experiment at PaN facilities (02/10/2020) FAIR, research data, data management, metadata, wp2-ExPaNDS facility staff instrument scientist
FAIR for facilities

Video recording of the workshop providing an overview of FAIR to PaN facilities (01/10/2020)

Keywords: FAIR, research data, wp2-ExPaNDS

Resource type: video

FAIR for facilities https://pan-training.eu/materials/fair-for-facilities Video recording of the workshop providing an overview of FAIR to PaN facilities (01/10/2020) FAIR, research data, wp2-ExPaNDS PaN Community instrument scientist facility staff