Ewoks tutorial for developers
Learn how to create and execute workflows with Ewoks
Keywords: Ewoks, workflows, tutorial
Resource type: jupyter notebook
Ewoks tutorial for developers
https://ewoksfordevs.readthedocs.io
https://pan-training.eu/materials/ewoks-tutorial-for-developers
Learn how to create and execute workflows with Ewoks
Ewoks, workflows, tutorial
software developers
Training Workflow on Terahertz Spectroscopy at TELBE
The radiation source ELBE (Electron Linac for beams with high Brilliance and low Emittance) at the Helmholtz Centre Dresden Rossendorf (HZDR) can produce several kinds of secondary radiations. THz radiation is one of them and can be used with a typical pulse frequency of 100 kHz as a stimulation...
Scientific topics: spectroscopy, THz photon probe
Keywords: terahertz, Higgs, dataset, data analysis, spectroscopy, FAIR, training, TELBE, photon, metadata, TELBE
Resource type: lesson, workflow, training
Training Workflow on Terahertz Spectroscopy at TELBE
https://pan-training.eu/workflows/telbe
https://pan-training.eu/materials/terahertz-spectroscopy-workflow
The radiation source ELBE (Electron Linac for beams with high Brilliance and low Emittance) at the Helmholtz Centre Dresden Rossendorf (HZDR) can produce several kinds of secondary radiations. THz radiation is one of them and can be used with a typical pulse frequency of 100 kHz as a stimulation source for elementary low-energy degrees of freedom in matter.
In this training workflow brings together background information of the experiment, the facility used, as well as the processing techniques and steps to understand the data generated by the experiment:
* The open accessible dataset
* The software
* Services to execute the analysis
spectroscopy
THz photon probe
terahertz, Higgs, dataset, data analysis, spectroscopy, FAIR, training, TELBE, photon, metadata, TELBE
PaN Community
beamline users
graduate students
Offline data analysis tutorial
Tutorial on European XFEL offline data analysis as per example of MID instrument data
Scientific topics: small angle x-ray scattering
Keywords: Extra-data, Extra-geom, pyFAI, data analysis
Resource type: jupyter notebook
Offline data analysis tutorial
https://indico.desy.de/event/33127/contributions/117081/
https://pan-training.eu/materials/offline-analysis-tutorial
Tutorial on European XFEL offline data analysis as per example of MID instrument data
small angle x-ray scattering
Extra-data, Extra-geom, pyFAI, data analysis
PaN users
beamline users
research data scientist
Jupyter notebooks on Machine Learning for scientific data analysis
Jupyter Notebooks serving as supplementary material for a tutorial on Machine Learning, originally presented at the 2022 European XFEL user meeting.
Resource type: jupyter notebook
Jupyter notebooks on Machine Learning for scientific data analysis
https://git.xfel.eu/danilo/ml-tutorial
https://pan-training.eu/materials/jupyter-notebooks-on-machine-learning-for-scientific-data-analysis
Jupyter Notebooks serving as supplementary material for a tutorial on Machine Learning, originally presented at the 2022 European XFEL user meeting.
research data scientist
PhD students
masters students
JupyLabBook
A Jupyter Notebook used as an interactive lab book on the beamline SIRIUS (SOLEIL Synchrotron).
Keywords: labbook, jupyter notebook, SIRIUS beamline
Resource type: git, jupyter notebook
JupyLabBook
https://gitlab.com/soleil-data-treatment/soleil-beamlines/soleil-beamline-sirius/JupyLabBook
https://pan-training.eu/materials/jupylabbook
A Jupyter Notebook used as an interactive lab book on the beamline SIRIUS (SOLEIL Synchrotron).
labbook, jupyter notebook, SIRIUS beamline
JupyFluo
JupyFluo is a Jupyter Notebook to analyze X-Ray Fluorescence (XRF) experiments on the beamline SIRIUS at the synchrotron SOLEIL.
The notebook should be first set up by an Expert following the instructions in the "Expert" section. User can then follow the guidelines in the "User" section to start...
Scientific topics: x-ray fluorescence
Keywords: X-ray fluorescence, jupyter notebook, SIRIUS beamline
Resource type: git, jupyter notebook
JupyFluo
https://gitlab.com/soleil-data-treatment/soleil-beamlines/soleil-beamline-sirius/JupyFluo
https://pan-training.eu/materials/jupyfluo
JupyFluo is a Jupyter Notebook to analyze X-Ray Fluorescence (XRF) experiments on the beamline SIRIUS at the synchrotron SOLEIL.
The notebook should be first set up by an Expert following the instructions in the "Expert" section. User can then follow the guidelines in the "User" section to start using the notebook. Please note that the notebook is currently in development. As such, be skeptical about any unexpected results. Any feedback on the notebook or the code is welcome.
x-ray fluorescence
X-ray fluorescence, jupyter notebook, SIRIUS beamline
How to read/edit a nexus file using h5py
A tutorial notebook on how to read and edit a nexus file using h5py.
Keywords: NeXus
Resource type: git, jupyter notebook
How to read/edit a nexus file using h5py
https://gitlab.com/soleil-data-treatment/soleil-beamlines/soleil-beamline-sirius/tutorials/tutorial_edit_nexus/-/blob/main/howto_edit_nexus.ipynb
https://pan-training.eu/materials/how-to-read-edit-a-nexus-file-using-h5py
A tutorial notebook on how to read and edit a nexus file using h5py.
NeXus
GenX tutorial
howto_batch
The notebook batch_genx.ipynb details the different steps on how to use GenX with command lines.
The aim is to batch fits for XRR without the GUI. To do so we edit the .hgx files, which are just hdf5 files.
The script batch_genx.py is a condensed script without all the details...
Scientific topics: x-ray reflectivity
Keywords: GenX, jupyter notebook, XRR
Resource type: git, jupyter notebook
GenX tutorial
https://gitlab.com/soleil-data-treatment/soleil-beamlines/soleil-beamline-sirius/tutorials/tutorial_genx
https://pan-training.eu/materials/genx-tutorial
howto_batch
The notebook batch_genx.ipynb details the different steps on how to use GenX with command lines.
The aim is to batch fits for XRR without the GUI. To do so we edit the .hgx files, which are just hdf5 files.
The script batch_genx.py is a condensed script without all the details from the notebook.
howto_parameters
Explains what are the different parameters in the GUI.
x-ray reflectivity
GenX, jupyter notebook, XRR
PaNOSC search scoring
It illustrates how the Scoring service is designed, how to deploy it and integrate it with the local data catalogue system and the PaN Search api
Keywords: expands, PaNOSC, scoring
Resource type: github
PaNOSC search scoring
https://github.com/panosc-eu/panosc-search-scoring
https://pan-training.eu/materials/panosc-search-scoring
It illustrates how the Scoring service is designed, how to deploy it and integrate it with the local data catalogue system and the PaN Search api
expands, PaNOSC, scoring
PaN Community
ExPaNDS and PaNOSC project members
data curator
data managers
research data engineer
PaNET implementation by the pan-ontologies-API RESTful service
The application provides a data catalogue independent implementation retrieval and processing of ontologies from an external source. Currently, only the PaNET ontology is implemented. Below is a schematic data flow depicting the role of the pan-ontologies-api.
Keywords: expands, PaNOSC, data catalogue, ontology, wp3-ExPaNDS
Resource type: git, github, Git Project
PaNET implementation by the pan-ontologies-API RESTful service
https://github.com/ExPaNDS-eu/pan-ontologies-api
https://pan-training.eu/materials/pan-ontologies-api
The application provides a data catalogue independent implementation retrieval and processing of ontologies from an external source. Currently, only the PaNET ontology is implemented. Below is a schematic data flow depicting the role of the pan-ontologies-api.
expands, PaNOSC, data catalogue, ontology, wp3-ExPaNDS
PaN Community
ExPaNDS and PaNOSC project members
