Computational Reproducibility with the shell, Git and Docker
This workshop provides an overview over tools for computational reproducibility in research. At the end of this workshop participants will be able to navigate via the shell and use it for version control with Git. They will know what types of projects require which forms of computing environments...
Keywords: scientific software, reproducibility, docker container, version control, shell
Resource type: slides
Computational Reproducibility with the shell, Git and Docker
https://osf.io/ar57z/
https://pan-training.eu/materials/computational-reproducibility-with-the-shell-git-and-docker
This workshop provides an overview over tools for computational reproducibility in research. At the end of this workshop participants will be able to navigate via the shell and use it for version control with Git. They will know what types of projects require which forms of computing environments and be able to set up a Docker container to run computations in a reproducible way.
scientific software, reproducibility, docker container, version control, shell
research data scientist
PhD students
researchers
scientists
KFN Neutron Webinar
Lectures of the KFN Neutron Webinar, which are held monthly since April 2023.
We thank all the speakers who have agreed to have their presentation shared in this collection, curated by Thomas Gutberlet and Karin Griewatsch.
Keywords: neutron, spallation, European Spallation Source, energy technology, COVID, inhibitors, quantum topology, neutrinos, High Brilliance Neutron Source, HBS, HiCANS, neutron source, ISIS,
Resource type: video
KFN Neutron Webinar
https://www.sni-portal.de/en/user-committees/committee-research-with-neutrons/neutron-webinar/kfn-neutron-webinar-recorded-lectures
https://pan-training.eu/materials/kfn-neutron-webinar
Lectures of the KFN Neutron Webinar, which are held monthly since April 2023.
We thank all the speakers who have agreed to have their presentation shared in this collection, curated by Thomas Gutberlet and Karin Griewatsch.
neutron, spallation, European Spallation Source, energy technology, COVID, inhibitors, quantum topology, neutrinos, High Brilliance Neutron Source, HBS, HiCANS, neutron source, ISIS,
scientists
students
Nexus - Nuclear Elastic X-ray scattering Universal Software
Repositroy for the Nexus. The Nuclear Elastic X-ray scattering Universal Software (Nexus) is a Python package for simulating and fitting of Moessbauer spectra, nuclear resonant scattering (NRS) data, pure electronic X-ray reflectivities (XRR), nuclear X-ray reflectivities (nXRR), and polarization...
Scientific topics: nuclear resonant scattering, reflectometry, polarimetry
Keywords: Nuclear Physics, Mossbauer spectroscopy, Nuclear resonant scattering
Resource type: software
Nexus - Nuclear Elastic X-ray scattering Universal Software
https://gitlab.desy.de/fs-mcp/nuclear-nexus
https://pan-training.eu/materials/nexus-nuclear-elastic-x-ray-scattering-universal-software
Repositroy for the Nexus. The Nuclear Elastic X-ray scattering Universal Software (Nexus) is a Python package for simulating and fitting of Moessbauer spectra, nuclear resonant scattering (NRS) data, pure electronic X-ray reflectivities (XRR), nuclear X-ray reflectivities (nXRR), and polarization dependent electronic scattering.
nuclear resonant scattering
reflectometry
polarimetry
Nuclear Physics, Mossbauer spectroscopy, Nuclear resonant scattering
researchers
scientists
Advanced infrastructure for PIDs in Photon and Neutron RIs
This deliverable accumulates results of ExPaNDS works on the topic of persistent identifiers (PIDs) in facilities research. It refers to the substantial effort of persistent identifiers adoption in facilities and in a larger research ecosystem, and provides a general guidance, as well as...
Keywords: persistent identifiers, wp2-ExPaNDS
Resource type: project deliverable
Advanced infrastructure for PIDs in Photon and Neutron RIs
https://zenodo.org/record/5905351#.Yk6-5S8RoeY
https://pan-training.eu/materials/advanced-infrastructure-for-pids-in-photon-and-neutron-ris
This deliverable accumulates results of ExPaNDS works on the topic of persistent identifiers (PIDs) in facilities research. It refers to the substantial effort of persistent identifiers adoption in facilities and in a larger research ecosystem, and provides a general guidance, as well as prioritised recommendations for research information practitioners who consider going beyond the current levels of persistent identifiers adoption by photon and neutron research infrastructures.
persistent identifiers, wp2-ExPaNDS
facility staff
scientists
PaNdata software catalogue
PaNdata software catalogue is a database of software used mainly for data analysis of neutron and photon experiments.
Scientific topics: photon and neutron technique, crystallography, imaging, macromolecular crystallography, nuclear resonant scattering, powder diffraction, ptychography, radiotherapy, small angle x-ray scattering, small angle inelastic scattering, single crystal diffraction, surface crystallography, tomography
Keywords: software, FAIR, catalogue
Resource type: tool
PaNdata software catalogue
https://software.pan-data.eu/
https://pan-training.eu/materials/pandata-software-catalogue
PaNdata software catalogue is a database of software used mainly for data analysis of neutron and photon experiments.
photon and neutron technique
crystallography
imaging
macromolecular crystallography
nuclear resonant scattering
powder diffraction
ptychography
radiotherapy
small angle x-ray scattering
small angle inelastic scattering
single crystal diffraction
surface crystallography
tomography
software, FAIR, catalogue
scientists
neutron community
Photon Community
research data scientist
IR spectromicroscopy and imaging with six decades of dynamic range
Speaker: Dr Ferenc Borondics, SMIS Beamline Manager, SOLEIL, France
Infrared spectroscopy has been in scientists’ toolbox for more than a century to obtain information about vibrational properties and low energy electrodynamics of materials. The beginning of the 80s brought the first...
Keywords: infrared spectromicroscopy, imaging
Resource type: video
IR spectromicroscopy and imaging with six decades of dynamic range
https://www.youtube.com/watch?v=tLL-V28CZ8A
https://pan-training.eu/materials/ir-spectromicroscopy-and-imaging-with-six-decades-of-dynamic-range
Speaker: Dr Ferenc Borondics, SMIS Beamline Manager, SOLEIL, France
Infrared spectroscopy has been in scientists’ toolbox for more than a century to obtain information about vibrational properties and low energy electrodynamics of materials. The beginning of the 80s brought the first commercial infrared microscopes to look into fine details. Far-field infrared spectromicroscopy had been pushed to its limits in the 90s at synchrotron facilities by exploiting the unrivaled quality of synchrotron radiation, i.e., low angular divergence and extremely high bandwidth. Synchrotron infrared spectromicroscopy beamlines provide diffraction-limited spatial resolution covering the whole IR range and enable experiments impossible otherwise. Later, the implementation of two-dimensional IR detectors allowed hyperspectral imaging of large samples with high spatial resolution. The turn of the century brought the advent of near-field IR techniques breaking through the diffraction limit. Combining high-brightness IR sources with atomic force microscopes to detect photothermal expansion or near-field scattering allows measurements hundreds of times below the diffraction limit reaching as high as ten-nanometer spatial resolution. Optically sampled photothermal spectromicroscopy has recently become available to bridge the resolution gap between the nanometer and micrometer range. We combine these techniques at the SMIS beamline to enable six orders of magnitude spatial dynamic range in infrared spectromicroscopy and support scientific discovery by exploiting the synchrotron source through commercial and custom instrumentation. In this talk, I will highlight discoveries made by SMIS staff and users enabled by the beamline’s capability and comment on the benefits of emerging, alternative sources.
infrared spectromicroscopy, imaging
PaN Community
beamline users
scientists
Machine Learning-based Spectra Classification
Yue Sun presents: Machine Learning-based Spectra Classification at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
Scientific topics: spectroscopy
Keywords: machine learning, XFEL, FAIR, large dataset, NeXus, spectroscopy, wp5-ExPaNDS
Resource type: video, slides
Machine Learning-based Spectra Classification
https://zenodo.org/record/5636331/files/20211026-PaN-EOSC-Symposium2021-YueSun-UseCase.pdf?download=1
https://pan-training.eu/materials/machine-learning-based-spectra-classification
Yue Sun presents: Machine Learning-based Spectra Classification at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
spectroscopy
machine learning, XFEL, FAIR, large dataset, NeXus, spectroscopy, wp5-ExPaNDS
PaN Community
scientists
Neutron diffraction from Boro-carbon for efficient structural analysis and defect detection
Mousumi Upadhyay Kahaly presents: Neutron diffraction from Boro-carbon for efficient structural analysis and defect detection at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
Scientific topics: neutron diffraction, inelastic scattering
Keywords: McStas, simulation, inelastic neutron scattering, ab-initio, neutron scattering, neutron, neutron diffraction, defect detection, structural analysis, wp5-ExPaNDS
Resource type: video, slides
Neutron diffraction from Boro-carbon for efficient structural analysis and defect detection
https://zenodo.org/record/5636331/files/20211026-PaN-EOSC-Symposium2021-MousumiUpadhyayKahaly-UseCase.pdf?download=1
https://pan-training.eu/materials/neutron-diffraction-from-boro-carbon-for-efficient-structural-analysis-and-defect-detection
Mousumi Upadhyay Kahaly presents: Neutron diffraction from Boro-carbon for efficient structural analysis and defect detection at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
neutron diffraction
inelastic scattering
McStas, simulation, inelastic neutron scattering, ab-initio, neutron scattering, neutron, neutron diffraction, defect detection, structural analysis, wp5-ExPaNDS
PaN Community
scientists
Introduction to Soft X-ray Transmission and Emission Microscope, TwinMic at Elettra Sincrotrone Trieste
Introduction to the TwinMic Beamline:
Soft X-ray Transmission and Emission Microscope at the CERIC Italian partner facility, Elettra Sincrotrone Trieste
---TwinMic beamline webpage in the CERIC website:...
Keywords: soft X-ray Microscopy, synchrotron, Central European Research Infrastructure Consortium, CERIC, synchrotron beamline, microscopy, electrochemistry, battery research, Heritage Science, Elettra synchrotron, Elettra Sincrotrone Trieste, life sciences, microscope
Resource type: video
Introduction to Soft X-ray Transmission and Emission Microscope, TwinMic at Elettra Sincrotrone Trieste
https://youtu.be/Z7bo5jgOhWU
https://pan-training.eu/materials/introduction-to-soft-x-ray-transmission-and-emission-microscope-twinmic-at-elettra-sincrotrone-trieste
Introduction to the TwinMic Beamline:
Soft X-ray Transmission and Emission Microscope at the CERIC Italian partner facility, Elettra Sincrotrone Trieste
---TwinMic beamline webpage in the CERIC website: https://www.ceric-eric.eu/lab-instrument/soft-x-ray-transmission-and-emission-microscope/
---TwinMic beamline webpage in the Elettra website: https://www.elettra.trieste.it/elettra-beamlines/twinmic.html
soft X-ray Microscopy, synchrotron, Central European Research Infrastructure Consortium, CERIC, synchrotron beamline, microscopy, electrochemistry, battery research, Heritage Science, Elettra synchrotron, Elettra Sincrotrone Trieste, life sciences, microscope
researchers
scientists
PhD students
chemists
physicists
biologists
Introduction to High-Resolution Transmission Electron Microscopy (HRTEM) and Electron Paramagnetic Resonance (EPR) at NIMP
Introduction, by Corneliu Ghica and Mariana Stefan, to High-Resolution Transmission Electron Microscopy (HRTEM) and Electron Paramagnetic Resonance (EPR) at the National Institute of Materials Physics in Magurele, Romania
HRTEM webpage:...
Keywords: High-Resolution Transmission Electron Microscopy (HRTEM), Electron Paramagnetic Resonance (EPR), CERIC, Central European Research Infrastructure Consortium, National Institute of Materials Physics, life sciences, Materials Science, Heritage Science, astrobiology, biomedical nanomaterials, radiation detection, radiation conversion, semiconductors, insulating materials
Resource type: video
Introduction to High-Resolution Transmission Electron Microscopy (HRTEM) and Electron Paramagnetic Resonance (EPR) at NIMP
https://youtu.be/2gEmR0r68mc
https://pan-training.eu/materials/introduction-to-high-resolution-transmission-electron-microscopy-hrtem-and-electron-paramagnetic-resonance-epr-at-nimp
Introduction, by Corneliu Ghica and Mariana Stefan, to High-Resolution Transmission Electron Microscopy (HRTEM) and Electron Paramagnetic Resonance (EPR) at the National Institute of Materials Physics in Magurele, Romania
HRTEM webpage: https://www.ceric-eric.eu/lab-instrument/high-resolution-transmission-electron-microscopy/
EPR webpage: https://www.ceric-eric.eu/lab-instrument/electron-paramagnetic-resonance/
High-Resolution Transmission Electron Microscopy (HRTEM), Electron Paramagnetic Resonance (EPR), CERIC, Central European Research Infrastructure Consortium, National Institute of Materials Physics, life sciences, Materials Science, Heritage Science, astrobiology, biomedical nanomaterials, radiation detection, radiation conversion, semiconductors, insulating materials
researchers
scientists
PhD students
physicists
material scientists
Introduction to solid-State Nuclear Magnetic Resonance (NMR) at the Slovenian NMR Centre
Introduction to Solid-State Nuclear Magnetic Resonance (NMR) at the CERIC Slovenian partner facility, the Slovenian NMR Centre at the National Institute of Chemistry in Ljubljana
by Gregor Mali and Andraž Krajnc
Link to related NMR webpages:...
Keywords: Solid-state nuclear magnetic resonance, NMR, life sciences, battery research, pharmaceutical research, NMR spectra, NMR spectroscopy, Slovenian NMR Centre, CERIC, Central European Research Infrastructure Consortium
Resource type: video
Introduction to solid-State Nuclear Magnetic Resonance (NMR) at the Slovenian NMR Centre
https://youtu.be/WIm9OG_DBoc
https://pan-training.eu/materials/introduction-to-solid-state-nuclear-magnetic-resonance-nmr-at-the-slovenian-nmr-centre
Introduction to Solid-State Nuclear Magnetic Resonance (NMR) at the CERIC Slovenian partner facility, the Slovenian NMR Centre at the National Institute of Chemistry in Ljubljana
by Gregor Mali and Andraž Krajnc
Link to related NMR webpages: https://www.ceric-eric.eu/lab-instrument/600-mhz-nuclear-magnetic-resonance-spectometer-2/
Solid-state nuclear magnetic resonance, NMR, life sciences, battery research, pharmaceutical research, NMR spectra, NMR spectroscopy, Slovenian NMR Centre, CERIC, Central European Research Infrastructure Consortium
researchers
scientists
PhD students
researchers in energy materials
chemists
Introduction to Liquid-State Nuclear Magnetic Resonance (NMR)
Introduction to Liquid-State Nuclear Magnetic Resonance (NMR) at the CERIC Slovenian partner facility, the Slovenian NMR Centre at the National Institute of Chemistry in Ljubljana
To get more insights on NMR spectroscopy, watch also the video on Solid-state NMR at: https://youtu.be/RVMAKM6RnRM
Keywords: Liquid-state NMR, NMR, Nuclear Magnetic Resonance, life sciences, COVID research, nucleic acids research, biochemistry, drug development
Resource type: video
Introduction to Liquid-State Nuclear Magnetic Resonance (NMR)
https://youtu.be/rX28mVzGeuQ
https://pan-training.eu/materials/introduction-to-liquid-state-nuclear-magnetic-resonance-nmr
Introduction to Liquid-State Nuclear Magnetic Resonance (NMR) at the CERIC Slovenian partner facility, the Slovenian NMR Centre at the National Institute of Chemistry in Ljubljana
To get more insights on NMR spectroscopy, watch also the video on Solid-state NMR at: https://youtu.be/RVMAKM6RnRM
Liquid-state NMR, NMR, Nuclear Magnetic Resonance, life sciences, COVID research, nucleic acids research, biochemistry, drug development
scientists
researchers
PhD students
biochemists
chemists
Neutron Diffractometer with a Position Sensitive Detector (PSD) at BNC
Introduction by Margit Fabian, to the Neutron Diffractometer with a Position Sensitive Detector (PSD) at the the CERIC Hungarian partner facility, the Budapest Neutron Centre of the Centre for Energy Research (EK)
PSD webpage:...
Keywords: Budapest Neutron Centre, Centre for Energy Research, Neutron Diffractometer with Position Sensitive Detector, neutron research, neutron diffractometry, optical medicine, radioactive waste stabilization, laser development, human bone regeneration, battery research, solid-state batteries, neutron powder diffraction
Resource type: video
Neutron Diffractometer with a Position Sensitive Detector (PSD) at BNC
https://youtu.be/W1E0Ukr9jEs
https://pan-training.eu/materials/neutron-diffractometer-with-a-position-sensitive-detector-psd-at-bnc
Introduction by Margit Fabian, to the Neutron Diffractometer with a Position Sensitive Detector (PSD) at the the CERIC Hungarian partner facility, the Budapest Neutron Centre of the Centre for Energy Research (EK)
PSD webpage: https://www.ceric-eric.eu/lab-instrument/neutron-diffractometer-with-a-position-sensitive-detector-system/
Budapest Neutron Centre, Centre for Energy Research, Neutron Diffractometer with Position Sensitive Detector, neutron research, neutron diffractometry, optical medicine, radioactive waste stabilization, laser development, human bone regeneration, battery research, solid-state batteries, neutron powder diffraction
scientists
researchers
PhD students
researchers in energy materials
Introduction to Angle Resolved Photoelectron Spectroscopy - ARPES Beamline at the SOLARIS synchrotron
Introduction to the ARPES Beamline by Prof. Jacek J. Kolodziej and Natalia Olszowska:
Angle Resolved Photoelectron Spectroscopy at the CERIC Polish partner facility, the National Synchrotron Radiation Centre SOLARIS in Krakow, Poland
ARPES webpage:...
Keywords: photoemission spectroscopy, Angle Resolved Photoemission Spectroscopy, superconducotrs, semiconductors, graphene research, 2D materials, topological insulators
Resource type: video
Introduction to Angle Resolved Photoelectron Spectroscopy - ARPES Beamline at the SOLARIS synchrotron
https://youtu.be/Zmi2Nwh5ySQ
https://pan-training.eu/materials/introduction-to-angle-resolved-photoelectron-spectroscopy-arpes-beamline-at-the-solaris-synchrotron
Introduction to the ARPES Beamline by Prof. Jacek J. Kolodziej and Natalia Olszowska:
Angle Resolved Photoelectron Spectroscopy at the CERIC Polish partner facility, the National Synchrotron Radiation Centre SOLARIS in Krakow, Poland
ARPES webpage: https://www.ceric-eric.eu/lab-instrument/ultra-angle-resolved-photoelectron-spectroscopy/
photoemission spectroscopy, Angle Resolved Photoemission Spectroscopy, superconducotrs, semiconductors, graphene research, 2D materials, topological insulators
scientists
researchers
Materials scientists
PhD students
Introduction to Small-Angle X-ray Scattering - SAXS beamline at the TUGraz Outstation at the Elettra synchrotron
Introduction to the SAXS Beamline by Heinz Amenitsch and Barbara Sartori: :
Small-Angle X-ray Scattering at the CERIC Austrian partner facility of the Graz University of Technology at the Elettra synchrotron in Trieste, Italy
Link to SAXS webpage:...
Keywords: Small-Angle X-ray scattering, Materials Science, COVID research, life sciences, drug delivery, surface science
Resource type: video
Introduction to Small-Angle X-ray Scattering - SAXS beamline at the TUGraz Outstation at the Elettra synchrotron
https://youtu.be/MyFEePGkk0w
https://pan-training.eu/materials/introduction-to-small-angle-x-ray-scattering-saxs-beamline-at-the-tugraz-outstation-at-the-elettra-synchrotron
Introduction to the SAXS Beamline by Heinz Amenitsch and Barbara Sartori: :
Small-Angle X-ray Scattering at the CERIC Austrian partner facility of the Graz University of Technology at the Elettra synchrotron in Trieste, Italy
Link to SAXS webpage: https://www.ceric-eric.eu/lab-instrument/small-angle-x-ray-scattering/
Small-Angle X-ray scattering, Materials Science, COVID research, life sciences, drug delivery, surface science
scientists
researchers
Materials scientists
biologists
chemists
life scientists
Introduction to SANS: Small Angle Neutron Scattering at BNC
Introduction to SANS Introduction to SANS by Adél Len and László Almásy:
Small Angle Neutron Scattering at the CERIC Hungarian partner facility, the Budapest Neutron Centre of the Centre for Energy Research (EK)
Link to SANS webpage:...
Keywords: neutron scattering, Small Angle Neutron Scattering, Materials Science, drug delivery, Heritage Science, pharmaceutical research
Resource type: video
Introduction to SANS: Small Angle Neutron Scattering at BNC
https://youtu.be/84hiIjjQdCg
https://pan-training.eu/materials/introduction-to-sans-small-angle-neutron-scattering-at-bnc
Introduction to SANS Introduction to SANS by Adél Len and László Almásy:
Small Angle Neutron Scattering at the CERIC Hungarian partner facility, the Budapest Neutron Centre of the Centre for Energy Research (EK)
Link to SANS webpage: https://www.ceric-eric.eu/lab-instrument/small-angle-neutron-scattering-diffractometer/
neutron scattering, Small Angle Neutron Scattering, Materials Science, drug delivery, Heritage Science, pharmaceutical research
scientists
researchers
archaeologist
biologists
Materials scientists
Introduction to PGAA: Prompt-Gamma Neutron Activation Analysis and Neutron Imaging at BNC
Introduction by László Szentmiklósi, to Prompt-Gamma Neutron Activation Analysis (PGAA) and Neutron Imaging at the the CERIC-ERIC Hungarian partner facility, the Budapest Neutron Centre of the Centre for Energy Research (EK)
Link to PGAA webpage:...
Keywords: Prompt-Gamma Neutron Activation Analysis, PGAA, Neutron imaging, archaeology, Materials Science, Heritage Science, Engineering
Resource type: video
Introduction to PGAA: Prompt-Gamma Neutron Activation Analysis and Neutron Imaging at BNC
https://youtu.be/APCQiATOR7g
https://pan-training.eu/materials/introduction-to-pgaa-prompt-gamma-neutron-activation-analysis-and-neutron-imaging-at-bnc
Introduction by László Szentmiklósi, to Prompt-Gamma Neutron Activation Analysis (PGAA) and Neutron Imaging at the the CERIC-ERIC Hungarian partner facility, the Budapest Neutron Centre of the Centre for Energy Research (EK)
Link to PGAA webpage: https://www.ceric-eric.eu/lab-instrument/prompt-gamma-neutron-activation-analysis/
Link to RAD webpage: https://www.ceric-eric.eu/lab-instrument/thermal-radiography-station/
Prompt-Gamma Neutron Activation Analysis, PGAA, Neutron imaging, archaeology, Materials Science, Heritage Science, Engineering
researchers
PhD students
scientists
archaeologists
Materials scientists
engineers
experts / scientists in heritage sciences
Introduction to DXRL: Deep X-ray Lithography at the Elettra synchrotron in Trieste
Introduction to DXRL by Benedetta Marmiroli:
Deep X-ray Lithography at the CERIC Austrian partner facility of the Graz University of Technology at the Elettra synchrotron in Trieste, Italy
---DXRL webpage on the CERIC website:...
Keywords: CERIC, Central European Research Infrastructure Consortium, deep x-ray lithography, DXRL
Resource type: video
Introduction to DXRL: Deep X-ray Lithography at the Elettra synchrotron in Trieste
https://youtu.be/Dm3vz0SwOp4
https://pan-training.eu/materials/introduction-to-dxrl-deep-x-ray-lithography-at-the-elettra-synchrotron-in-trieste
Introduction to DXRL by Benedetta Marmiroli:
Deep X-ray Lithography at the CERIC Austrian partner facility of the Graz University of Technology at the Elettra synchrotron in Trieste, Italy
---DXRL webpage on the CERIC website: https://www.ceric-eric.eu/lab-instrument/dynamic-light-scattering/
---DXRL webpage on the Elettra website: https://elettra.eu/elettra-beamlines/dxrl.html
CERIC, Central European Research Infrastructure Consortium, deep x-ray lithography, DXRL
researchers
scientists
engineers