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Multiomics data analysis using MultiGSEA

Peptide and Protein ID using OpenMS tools

Clinical Metaproteomics 5: Data Interpretation

EncyclopeDIA

Peptide and Protein ID using SearchGUI and PeptideShaker

DIA Analysis using OpenSwathWorkflow

Neoantigen 3: PepQuery2 Verification

Annotating a protein list identified by LC-MS/MS experiments

Biomarker candidate identification

MaxQuant and MSstats for the analysis of label-free data