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Training materials on scientific Python programming and silx libraries.

This repository contains some training materials on scientific Python programming and silx libraries. General topics: * Introduction to Python and numpy * Software engineering tools and tips for Python silx trainings: * Features of the silx toolkit * Introduction to Fable Input/Output...

Keywords: Python, Silx, data analysis, data reduction, data visualisation

Training materials on scientific Python programming and silx libraries. https://pan-training.eu/materials/training-materials-on-scientific-python-programming-and-silx-libraries This repository contains some training materials on scientific Python programming and silx libraries. General topics: * Introduction to Python and numpy * Software engineering tools and tips for Python silx trainings: * Features of the silx toolkit * Introduction to Fable Input/Output (aka. fabio) library" Python, Silx, data analysis, data reduction, data visualisation
Ewoks tutorial for developers

Learn how to create and execute workflows with Ewoks

Keywords: Ewoks, workflows, tutorial

Resource type: jupyter notebook

Ewoks tutorial for developers https://pan-training.eu/materials/ewoks-tutorial-for-developers Learn how to create and execute workflows with Ewoks Ewoks, workflows, tutorial software developers
How to mint a DOI

How to create a DOI for a specific set of datasets using the ESRF data portal.

Keywords: doi, data management, data object identifier, mint, dataset, data management, open data, Open Science, ESRF data portal

How to mint a DOI https://pan-training.eu/materials/how-to-mint-a-doi How to create a DOI for a specific set of datasets using the ESRF data portal. doi, data management, data object identifier, mint, dataset, data management, open data, Open Science, ESRF data portal
How to share data and logbook with collaborators

How to share data and logbook with collaborators easily

Keywords: data management, open data, Open Science, logbook, sharing, ESRF data portal

How to share data and logbook with collaborators https://pan-training.eu/materials/how-to-share-data-and-logbook-with-collaborators How to share data and logbook with collaborators easily data management, open data, Open Science, logbook, sharing, ESRF data portal
Free-Electron Lasers: Delivering brilliant science - Breakthroughs from the last 10 years

Free-electron lasers (FELs) enable us to probe and explore the details of the world and universe around us with unprecedented precision. For the past 15 years X-ray free-electron lasers have shed light on the smallest structural details and most fleeting of reactions, generating insights that...

Keywords: FEL, Free-Electron Lasers, X-ray

Resource type: brochure

Free-Electron Lasers: Delivering brilliant science - Breakthroughs from the last 10 years https://pan-training.eu/zenodomaterials/free-electron-lasers-delivering-brilliant-science-breakthroughs-from-the-last-10-years Free-electron lasers (FELs) enable us to probe and explore the details of the world and universe around us with unprecedented precision. For the past 15 years X-ray free-electron lasers have shed light on the smallest structural details and most fleeting of reactions, generating insights that continually push at the frontier of our knowledge and light up entirely new fields of science. This builds on over 40 years of free-electron laser experience in the infrared and ultraviolet spectrum which, alongside the more recently developed X-ray sources, continue to deliver cutting edge science today and into the future. FEL, Free-Electron Lasers, X-ray
Tomwer: Slice stack standalone

How to display a set of slices from the standalone application

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, volume, projections, NXtomo

Resource type: video

Tomwer: Slice stack standalone https://pan-training.eu/materials/tomwer-slice-stack-standalone How to display a set of slices from the standalone application tomography tomography, tomotools, tomwer, nabu, volume, projections, NXtomo
Tomwer: Slice stack from canvas

How to display a set of slice from the orange canvas

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, volume, projections, NXtomo, canvas

Resource type: video

Tomwer: Slice stack from canvas https://pan-training.eu/materials/tomwer-slice-stack-from-canvas How to display a set of slice from the orange canvas tomography tomography, tomotools, tomwer, nabu, volume, projections, NXtomo, canvas
NXtomo stitching

tutorial on how to stitch NXtomos (projections) together.

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, stitching, NXtomo, projections

Resource type: video

NXtomo stitching https://pan-training.eu/materials/nxtomo-stitching tutorial on how to stitch NXtomos (projections) together. tomography tomography, tomotools, tomwer, nabu, stitching, NXtomo, projections
Tomwer: Z stitching of reconstructed volumes

Tutorials on how to stitch volumes reconstructed with nabu that have their positions along axis 0 (aka z) changing. Usually called a z-serie. tomotools

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, stitching, volume

Resource type: video

Tomwer: Z stitching of reconstructed volumes https://pan-training.eu/materials/tomwer-z-stitching-of-reconstructed-volumes Tutorials on how to stitch volumes reconstructed with nabu that have their positions along axis 0 (aka z) changing. Usually called a z-serie. tomotools tomography tomography, tomotools, tomwer, nabu, stitching, volume
Tomwer: Cancelling task

short example on how to cancel a on-going or pending task from the 'object supervisor'

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, task cancellation, canvas

Resource type: video

Tomwer: Cancelling task https://pan-training.eu/materials/tomwer-cancelling-task short example on how to cancel a on-going or pending task from the 'object supervisor' tomography tomography, tomotools, tomwer, nabu, task cancellation, canvas
Tomwer: Axis widget

simple demo of the 'axis widget' used to determine the center of rotation be fore slice reconstruction

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, center of rotation, axis, canvas

Resource type: video

Tomwer: Axis widget https://pan-training.eu/materials/tomwer-axis-widget simple demo of the 'axis widget' used to determine the center of rotation be fore slice reconstruction tomography tomography, tomotools, tomwer, nabu, center of rotation, axis, canvas
Access tomotools from visa.esrf.fr

Short description on how to: - connect to visa.esrf.fr (the ESRF's Virtual Research Environment) - create an instance (if needed) - load 'tomotools' module - run a simple reconstruction with nabu from CLI - display the reconstruction with silx view - unload the module

Scientific topics: tomography

Keywords: tomography, tomotools, nabu, VISA

Resource type: video

Access tomotools from visa.esrf.fr https://pan-training.eu/materials/access-tomotools-from-visa-esrf-fr Short description on how to: - connect to visa.esrf.fr (the ESRF's Virtual Research Environment) - create an instance (if needed) - load 'tomotools' module - run a simple reconstruction with nabu from CLI - display the reconstruction with silx view - unload the module tomography tomography, tomotools, nabu, VISA
Tomwer – semi-automated delta/beta research

"Tutorial to explain how to use the `sadeltabeta` widget. This widget is dedicated to research of delta / beta parameter. And use the same structure/mecanism as the `saaxis` widget and offer the same features. This video only show the 'interactive' mode but a 'fully automated' mode exists (see...

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, Paganin, canvas

Resource type: video

Tomwer – semi-automated delta/beta research https://pan-training.eu/materials/tomwer-semi-automated-delta-beta-research "Tutorial to explain how to use the `sadeltabeta` widget. This widget is dedicated to research of delta / beta parameter. And use the same structure/mecanism as the `saaxis` widget and offer the same features. This video only show the 'interactive' mode but a 'fully automated' mode exists (see video done for saaxis if necessary.)" tomography tomography, tomotools, tomwer, nabu, Paganin, canvas
How to edit NXtomo metadata

In this video we will show show you how to edit NXtomo metadata such as beam energy or sample / detector distance.

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, NeXus, NXtomo, edition, canvas

Resource type: video

How to edit NXtomo metadata https://pan-training.eu/materials/how-to-edit-nxtomo-metadata In this video we will show show you how to edit NXtomo metadata such as beam energy or sample / detector distance. tomography tomography, tomotools, tomwer, nabu, NeXus, NXtomo, edition, canvas
Tomwer – semi-automated center of rotation

"Tutorial to explain how to use the `saaxis` widget. This widget is dedicated to research of center of rotation which is a common bottleneck when reconstructing tomographic dataset. From it user can launch reconstruction for a serie of center of rotation and the same nabu reconstruction...

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, center of rotation, axis, canvas

Resource type: video

Tomwer – semi-automated center of rotation https://pan-training.eu/materials/tomwer-semi-automated-center-of-rotation "Tutorial to explain how to use the `saaxis` widget. This widget is dedicated to research of center of rotation which is a common bottleneck when reconstructing tomographic dataset. From it user can launch reconstruction for a serie of center of rotation and the same nabu reconstruction settings. Once reconstructed it compute scores on those reconstruction (like standard deviation, total variation...) to help users find the best value. Here we show how this process can be automatize" tomography tomography, tomotools, tomwer, nabu, center of rotation, axis, canvas
Tomwer – add a python script

Tutorial on how user can add their own processing into the workflow through a python script (advanced usage).

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, Python, canvas

Resource type: video

Tomwer – add a python script https://pan-training.eu/materials/tomwer-add-a-python-script Tutorial on how user can add their own processing into the workflow through a python script (advanced usage). tomography tomography, tomotools, tomwer, nabu, Python, canvas
Tomwer: How to use 'edf2nx' (convert EDF acquisition to NXtomo)

In this video we explain how to convert EDF acquisitions to NXtomos and the different options related to it.

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, spec, EDF, NXtomo, NeXus, canvas

Resource type: video

Tomwer: How to use 'edf2nx' (convert EDF acquisition to NXtomo) https://pan-training.eu/materials/tomwer-how-to-use-edf2nx-convert-edf-acquisition-to-nxtomo In this video we explain how to convert EDF acquisitions to NXtomos and the different options related to it. tomography tomography, tomotools, tomwer, nabu, spec, EDF, NXtomo, NeXus, canvas
Tomwer: How to define a volume from a drag and drop

"Explain how user can simply define a volume by a single drag and drop. * In the case of 'file based volume (like HDF5)' user must drag the 'master file' * In the case of 'folder baed volume (like EDF, JP2K...)' user must drag the 'master folder'"

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, volume, canvas

Resource type: video

Tomwer: How to define a volume from a drag and drop https://pan-training.eu/materials/tomwer-how-to-define-a-volume-from-a-drag-and-drop "Explain how user can simply define a volume by a single drag and drop. * In the case of 'file based volume (like HDF5)' user must drag the 'master file' * In the case of 'folder baed volume (like EDF, JP2K...)' user must drag the 'master folder'" tomography tomography, tomotools, tomwer, nabu, volume, canvas
How to edit NXtomo image key

"In this video we show you one dedicated interface to edit `image_key` of a specific NXtomo. This can allow user to ignore some frames (if image_key is set to zero) or fix some wrong image key."

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, NXtomo, NeXus, edition, image key

Resource type: video

How to edit NXtomo image key https://pan-training.eu/materials/how-to-edit-nxtomo-image-key "In this video we show you one dedicated interface to edit `image_key` of a specific NXtomo. This can allow user to ignore some frames (if image_key is set to zero) or fix some wrong image key." tomography tomography, tomotools, tomwer, nabu, NXtomo, NeXus, edition, image key
How to use projections from an NXtomo to be used as (reduced) flats or darks

"In this video we show how to use frames contains in an NXtomo as flats then as reduced flats. The same process works for other manipulation (as creating reduced darks)"

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, NXtomo, NeXus, reduced frames, edition, canvas

Resource type: video

How to use projections from an NXtomo to be used as (reduced) flats or darks https://pan-training.eu/materials/how-to-use-projections-from-an-nxtomo-to-be-used-as-reduced-flats-or-darks "In this video we show how to use frames contains in an NXtomo as flats then as reduced flats. The same process works for other manipulation (as creating reduced darks)" tomography tomography, tomotools, tomwer, nabu, NXtomo, NeXus, reduced frames, edition, canvas
How to convert (NXtomo) projections to reduced flats and use it

On this video we explain how to use projections (from an NXtomo) as flats then use them as reduced flats with another dataset.

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, NXtomo, NeXus, reduced frames, edition, canvas

Resource type: video

How to convert (NXtomo) projections to reduced flats and use it https://pan-training.eu/materials/how-to-convert-nxtomo-projections-to-reduced-flats-and-use-it On this video we explain how to use projections (from an NXtomo) as flats then use them as reduced flats with another dataset. tomography tomography, tomotools, tomwer, nabu, NXtomo, NeXus, reduced frames, edition, canvas
Tomwer: Select a volume from dedicated interface

how to use the `volume selector` when you can't or don't want to do a drag and drop

Scientific topics: tomography

Keywords: tomography, tomotools, nabu, tomwer, volume, canvas

Resource type: video

Tomwer: Select a volume from dedicated interface https://pan-training.eu/materials/tomwer-select-a-volume-from-dedicated-interface how to use the `volume selector` when you can't or don't want to do a drag and drop tomography tomography, tomotools, nabu, tomwer, volume, canvas
Tomwer: How to copy reduced darks and flats

Explain one solution to copy existing reduced darks and flats to be used on another dataset

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, reduced frames, copy, canvas

Resource type: video

Tomwer: How to copy reduced darks and flats https://pan-training.eu/materials/tomwer-how-to-copy-reduced-darks-and-flats Explain one solution to copy existing reduced darks and flats to be used on another dataset tomography tomography, tomotools, tomwer, nabu, reduced frames, copy, canvas
Tomwer: How to cast a volume to another type

On this video we explain how user can convert a volume (like HDF5 float32) to another type (like tiff-uint8)

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, volume, casting, canvas

Resource type: video

Tomwer: How to cast a volume to another type https://pan-training.eu/materials/tomwer-how-to-cast-a-volume-to-another-type On this video we explain how user can convert a volume (like HDF5 float32) to another type (like tiff-uint8) tomography tomography, tomotools, tomwer, nabu, volume, casting, canvas
"Processing tomographic data with tomwer software Step 5 - launch job on slurm"

video on how to launch some nabu job (slice / volume) reconstruction to the slurm-cluster

Scientific topics: tomography

Keywords: tomography, tomotools, tomwer, nabu, slurm, canvas

Resource type: video

"Processing tomographic data with tomwer software Step 5 - launch job on slurm" https://pan-training.eu/materials/processing-tomographic-data-with-tomwer-software-step-5-launch-job-on-slurm video on how to launch some nabu job (slice / volume) reconstruction to the slurm-cluster tomography tomography, tomotools, tomwer, nabu, slurm, canvas
TANGO Forum & Slack

Official Tango-Controls website (where you can access to a forum and to slack to ask questions and get in touch with some experts and other users)

Keywords: synchrotron control, TANGO, tango-controls, forum, slack

Resource type: forum

TANGO Forum & Slack https://pan-training.eu/materials/tango-forum-slack Official Tango-Controls website (where you can access to a forum and to slack to ask questions and get in touch with some experts and other users) synchrotron control, TANGO, tango-controls, forum, slack
TANGO tutorials

Documentation and tutorials to understand what Tango Controls is, guide your first steps as a user, developer or administrator of Tango.

Keywords: synchrotron control, TANGO, c++, Python, tango-controls, arduino, scada

Resource type: documenation

TANGO tutorials https://pan-training.eu/materials/tango-tutorials Documentation and tutorials to understand what Tango Controls is, guide your first steps as a user, developer or administrator of Tango. synchrotron control, TANGO, c++, Python, tango-controls, arduino, scada
Tango Workshop at ICALEPCS 2021

Tango Workshop at ICALEPCS 2021

Keywords: TANGO, tango-controls, TangoBox, conda, conda, debian, ubuntu, docker, windows, CentOS, Tango Source Distribution, PyTango, jtango, jupytango, cpptango, Sardana Configuration Demo, HDB++

Resource type: video

Tango Workshop at ICALEPCS 2021 https://pan-training.eu/materials/tango-workshop-at-icalepcs-2021 Tango Workshop at ICALEPCS 2021 TANGO, tango-controls, TangoBox, conda, conda, debian, ubuntu, docker, windows, CentOS, Tango Source Distribution, PyTango, jtango, jupytango, cpptango, Sardana Configuration Demo, HDB++
Sardana - Tango Configuration demo

The Sardana 3.4 version including SEP20 introduced a configuration text format based on YAML, and a set of CLI tools for configuring Sardana systems. In this video you will see a short demonstration on how to use them with Tango

Keywords: TANGO, tango-controls, Sardana Configuration Demo, Tango Kernel Webinar

Resource type: video

Sardana - Tango Configuration demo https://pan-training.eu/materials/sardana-tango-configuration-demo The Sardana 3.4 version including SEP20 introduced a configuration text format based on YAML, and a set of CLI tools for configuring Sardana systems. In this video you will see a short demonstration on how to use them with Tango TANGO, tango-controls, Sardana Configuration Demo, Tango Kernel Webinar
Tango Kernel Webinar - Taurus - Bonus during break

"Carlos Pascual-Izarra, who has been the main coordinator of Taurus development and maintenance for many years, presents the 5th Tango Kernel Webinar which is dedicated to Taurus. This is a knowledge-transfer webinar to facilitate other people taking over with Taurus maintenance."

Keywords: taurus, Tango Kernel Webinar

Resource type: video

Tango Kernel Webinar - Taurus - Bonus during break https://pan-training.eu/materials/tango-kernel-webinar-taurus-bonus-during-break "Carlos Pascual-Izarra, who has been the main coordinator of Taurus development and maintenance for many years, presents the 5th Tango Kernel Webinar which is dedicated to Taurus. This is a knowledge-transfer webinar to facilitate other people taking over with Taurus maintenance." taurus, Tango Kernel Webinar