Free-Electron Lasers: Delivering brilliant science - Breakthroughs from the last 10 years
Free-electron lasers (FELs) enable us to probe and explore the details of the
world and universe around us with unprecedented precision. For the past
15 years X-ray free-electron lasers have shed light on the smallest structural
details and most fleeting of reactions, generating insights that...
Keywords: FEL, Free-Electron Lasers, X-ray
Resource type: brochure
Free-Electron Lasers: Delivering brilliant science - Breakthroughs from the last 10 years
https://zenodo.org/record/13759295
https://pan-training.eu/zenodomaterials/free-electron-lasers-delivering-brilliant-science-breakthroughs-from-the-last-10-years
Free-electron lasers (FELs) enable us to probe and explore the details of the
world and universe around us with unprecedented precision. For the past
15 years X-ray free-electron lasers have shed light on the smallest structural
details and most fleeting of reactions, generating insights that continually
push at the frontier of our knowledge and light up entirely new fields of science.
This builds on over 40 years of free-electron laser experience in the infrared
and ultraviolet spectrum which, alongside the more recently developed X-ray
sources, continue to deliver cutting edge science today and into the future.
FEL, Free-Electron Lasers, X-ray
Tomwer: Slice stack standalone
How to display a set of slices from the standalone application
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, volume, projections, NXtomo
Resource type: video
Tomwer: Slice stack standalone
https://www.youtube.com/watch?v=4xpvQB2DIPk
https://pan-training.eu/materials/tomwer-slice-stack-standalone
How to display a set of slices from the standalone application
tomography
tomography, tomotools, tomwer, nabu, volume, projections, NXtomo
Tomwer: Slice stack from canvas
How to display a set of slice from the orange canvas
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, volume, projections, NXtomo, canvas
Resource type: video
Tomwer: Slice stack from canvas
https://www.youtube.com/watch?v=3X9ePy8eSg4
https://pan-training.eu/materials/tomwer-slice-stack-from-canvas
How to display a set of slice from the orange canvas
tomography
tomography, tomotools, tomwer, nabu, volume, projections, NXtomo, canvas
NXtomo stitching
tutorial on how to stitch NXtomos (projections) together.
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, stitching, NXtomo, projections
Resource type: video
NXtomo stitching
https://www.youtube.com/watch?v=t-VinnwtIfw
https://pan-training.eu/materials/nxtomo-stitching
tutorial on how to stitch NXtomos (projections) together.
tomography
tomography, tomotools, tomwer, nabu, stitching, NXtomo, projections
Tomwer: Z stitching of reconstructed volumes
Tutorials on how to stitch volumes reconstructed with nabu that have their positions along axis 0 (aka z) changing. Usually called a z-serie.
tomotools
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, stitching, volume
Resource type: video
Tomwer: Z stitching of reconstructed volumes
https://www.youtube.com/watch?v=Yhrde42Xxxs
https://pan-training.eu/materials/tomwer-z-stitching-of-reconstructed-volumes
Tutorials on how to stitch volumes reconstructed with nabu that have their positions along axis 0 (aka z) changing. Usually called a z-serie.
tomotools
tomography
tomography, tomotools, tomwer, nabu, stitching, volume
Tomwer: Cancelling task
short example on how to cancel a on-going or pending task from the 'object supervisor'
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, task cancellation, canvas
Resource type: video
Tomwer: Cancelling task
https://www.youtube.com/watch?v=MTMtw4oKV0I
https://pan-training.eu/materials/tomwer-cancelling-task
short example on how to cancel a on-going or pending task from the 'object supervisor'
tomography
tomography, tomotools, tomwer, nabu, task cancellation, canvas
Tomwer: Axis widget
simple demo of the 'axis widget' used to determine the center of rotation be fore slice reconstruction
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, center of rotation, axis, canvas
Resource type: video
Tomwer: Axis widget
https://www.youtube.com/watch?v=sc3Pmg7zWHQ
https://pan-training.eu/materials/tomwer-axis-widget
simple demo of the 'axis widget' used to determine the center of rotation be fore slice reconstruction
tomography
tomography, tomotools, tomwer, nabu, center of rotation, axis, canvas
Access tomotools from visa.esrf.fr
Short description on how to:
- connect to visa.esrf.fr (the ESRF's Virtual Research Environment)
- create an instance (if needed)
- load 'tomotools' module
- run a simple reconstruction with nabu from CLI
- display the reconstruction with silx view
- unload the module
Scientific topics: tomography
Keywords: tomography, tomotools, nabu, VISA
Resource type: video
Access tomotools from visa.esrf.fr
https://www.youtube.com/watch?v=nERMMj3y64M
https://pan-training.eu/materials/access-tomotools-from-visa-esrf-fr
Short description on how to:
- connect to visa.esrf.fr (the ESRF's Virtual Research Environment)
- create an instance (if needed)
- load 'tomotools' module
- run a simple reconstruction with nabu from CLI
- display the reconstruction with silx view
- unload the module
tomography
tomography, tomotools, nabu, VISA
Tomwer – semi-automated delta/beta research
"Tutorial to explain how to use the `sadeltabeta` widget.
This widget is dedicated to research of delta / beta parameter. And use the same structure/mecanism as the `saaxis` widget and offer the same features. This video only show the 'interactive' mode but a 'fully automated' mode exists (see...
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, Paganin, canvas
Resource type: video
Tomwer – semi-automated delta/beta research
https://www.youtube.com/watch?v=A8bZtEwLF7I
https://pan-training.eu/materials/tomwer-semi-automated-delta-beta-research
"Tutorial to explain how to use the `sadeltabeta` widget.
This widget is dedicated to research of delta / beta parameter. And use the same structure/mecanism as the `saaxis` widget and offer the same features. This video only show the 'interactive' mode but a 'fully automated' mode exists (see video done for saaxis if necessary.)"
tomography
tomography, tomotools, tomwer, nabu, Paganin, canvas
How to edit NXtomo metadata
In this video we will show show you how to edit NXtomo metadata such as beam energy or sample / detector distance.
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, NeXus, NXtomo, edition, canvas
Resource type: video
How to edit NXtomo metadata
https://www.youtube.com/watch?v=KwwCYXnP3YI
https://pan-training.eu/materials/how-to-edit-nxtomo-metadata
In this video we will show show you how to edit NXtomo metadata such as beam energy or sample / detector distance.
tomography
tomography, tomotools, tomwer, nabu, NeXus, NXtomo, edition, canvas
Tomwer – semi-automated center of rotation
"Tutorial to explain how to use the `saaxis` widget.
This widget is dedicated to research of center of rotation which is a common bottleneck when reconstructing tomographic dataset.
From it user can launch reconstruction for a serie of center of rotation and the same nabu reconstruction...
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, center of rotation, axis, canvas
Resource type: video
Tomwer – semi-automated center of rotation
https://www.youtube.com/watch?v=G9G55lGuDeA
https://pan-training.eu/materials/tomwer-semi-automated-center-of-rotation
"Tutorial to explain how to use the `saaxis` widget.
This widget is dedicated to research of center of rotation which is a common bottleneck when reconstructing tomographic dataset.
From it user can launch reconstruction for a serie of center of rotation and the same nabu reconstruction settings.
Once reconstructed it compute scores on those reconstruction (like standard deviation, total variation...) to help users find the best value.
Here we show how this process can be automatize"
tomography
tomography, tomotools, tomwer, nabu, center of rotation, axis, canvas
Tomwer – add a python script
Tutorial on how user can add their own processing into the workflow through a python script (advanced usage).
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, Python, canvas
Resource type: video
Tomwer – add a python script
https://www.youtube.com/watch?v=VGv628AIgn8
https://pan-training.eu/materials/tomwer-add-a-python-script
Tutorial on how user can add their own processing into the workflow through a python script (advanced usage).
tomography
tomography, tomotools, tomwer, nabu, Python, canvas
Tomwer: How to use 'edf2nx' (convert EDF acquisition to NXtomo)
In this video we explain how to convert EDF acquisitions to NXtomos and the different options related to it.
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, spec, EDF, NXtomo, NeXus, canvas
Resource type: video
Tomwer: How to use 'edf2nx' (convert EDF acquisition to NXtomo)
https://www.youtube.com/watch?v=Xzb_WDiDNsk
https://pan-training.eu/materials/tomwer-how-to-use-edf2nx-convert-edf-acquisition-to-nxtomo
In this video we explain how to convert EDF acquisitions to NXtomos and the different options related to it.
tomography
tomography, tomotools, tomwer, nabu, spec, EDF, NXtomo, NeXus, canvas
Tomwer: How to define a volume from a drag and drop
"Explain how user can simply define a volume by a single drag and drop.
* In the case of 'file based volume (like HDF5)' user must drag the 'master file'
* In the case of 'folder baed volume (like EDF, JP2K...)' user must drag the 'master folder'"
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, volume, canvas
Resource type: video
Tomwer: How to define a volume from a drag and drop
https://www.youtube.com/watch?v=R2jJrIZlGY8
https://pan-training.eu/materials/tomwer-how-to-define-a-volume-from-a-drag-and-drop
"Explain how user can simply define a volume by a single drag and drop.
* In the case of 'file based volume (like HDF5)' user must drag the 'master file'
* In the case of 'folder baed volume (like EDF, JP2K...)' user must drag the 'master folder'"
tomography
tomography, tomotools, tomwer, nabu, volume, canvas
How to edit NXtomo image key
"In this video we show you one dedicated interface to edit `image_key` of a specific NXtomo.
This can allow user to ignore some frames (if image_key is set to zero) or fix some wrong image key."
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, NXtomo, NeXus, edition, image key
Resource type: video
How to edit NXtomo image key
https://www.youtube.com/watch?v=4yrEBrAmwtY
https://pan-training.eu/materials/how-to-edit-nxtomo-image-key
"In this video we show you one dedicated interface to edit `image_key` of a specific NXtomo.
This can allow user to ignore some frames (if image_key is set to zero) or fix some wrong image key."
tomography
tomography, tomotools, tomwer, nabu, NXtomo, NeXus, edition, image key
How to use projections from an NXtomo to be used as (reduced) flats or darks
"In this video we show how to use frames contains in an NXtomo as flats then as reduced flats.
The same process works for other manipulation (as creating reduced darks)"
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, NXtomo, NeXus, reduced frames, edition, canvas
Resource type: video
How to use projections from an NXtomo to be used as (reduced) flats or darks
https://www.youtube.com/watch?v=vJOo0rHHUYk
https://pan-training.eu/materials/how-to-use-projections-from-an-nxtomo-to-be-used-as-reduced-flats-or-darks
"In this video we show how to use frames contains in an NXtomo as flats then as reduced flats.
The same process works for other manipulation (as creating reduced darks)"
tomography
tomography, tomotools, tomwer, nabu, NXtomo, NeXus, reduced frames, edition, canvas
How to convert (NXtomo) projections to reduced flats and use it
On this video we explain how to use projections (from an NXtomo) as flats then use them as reduced flats with another dataset.
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, NXtomo, NeXus, reduced frames, edition, canvas
Resource type: video
How to convert (NXtomo) projections to reduced flats and use it
https://www.youtube.com/watch?v=qwmBGes9G_A
https://pan-training.eu/materials/how-to-convert-nxtomo-projections-to-reduced-flats-and-use-it
On this video we explain how to use projections (from an NXtomo) as flats then use them as reduced flats with another dataset.
tomography
tomography, tomotools, tomwer, nabu, NXtomo, NeXus, reduced frames, edition, canvas
Tomwer: Select a volume from dedicated interface
how to use the `volume selector` when you can't or don't want to do a drag and drop
Scientific topics: tomography
Keywords: tomography, tomotools, nabu, tomwer, volume, canvas
Resource type: video
Tomwer: Select a volume from dedicated interface
https://www.youtube.com/watch?v=4-RJKWlP74w
https://pan-training.eu/materials/tomwer-select-a-volume-from-dedicated-interface
how to use the `volume selector` when you can't or don't want to do a drag and drop
tomography
tomography, tomotools, nabu, tomwer, volume, canvas
Tomwer: How to copy reduced darks and flats
Explain one solution to copy existing reduced darks and flats to be used on another dataset
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, reduced frames, copy, canvas
Resource type: video
Tomwer: How to copy reduced darks and flats
https://www.youtube.com/watch?v=aBLTWmuMTcQ
https://pan-training.eu/materials/tomwer-how-to-copy-reduced-darks-and-flats
Explain one solution to copy existing reduced darks and flats to be used on another dataset
tomography
tomography, tomotools, tomwer, nabu, reduced frames, copy, canvas
Tomwer: How to cast a volume to another type
On this video we explain how user can convert a volume (like HDF5 float32) to another type (like tiff-uint8)
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, volume, casting, canvas
Resource type: video
Tomwer: How to cast a volume to another type
https://www.youtube.com/watch?v=gQRWCsyIm7U
https://pan-training.eu/materials/tomwer-how-to-cast-a-volume-to-another-type
On this video we explain how user can convert a volume (like HDF5 float32) to another type (like tiff-uint8)
tomography
tomography, tomotools, tomwer, nabu, volume, casting, canvas
"Processing tomographic data with tomwer software Step 5 - launch job on slurm"
video on how to launch some nabu job (slice / volume) reconstruction to the slurm-cluster
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, slurm, canvas
Resource type: video
"Processing tomographic data with tomwer software Step 5 - launch job on slurm"
https://www.youtube.com/watch?v=HYufV7Ya9v8
https://pan-training.eu/materials/processing-tomographic-data-with-tomwer-software-step-5-launch-job-on-slurm
video on how to launch some nabu job (slice / volume) reconstruction to the slurm-cluster
tomography
tomography, tomotools, tomwer, nabu, slurm, canvas
TANGO Forum & Slack
Official Tango-Controls website (where you can access to a forum and to slack to ask questions and get in touch with some experts and other users)
Keywords: synchrotron control, TANGO, tango-controls, forum, slack
Resource type: forum
TANGO Forum & Slack
https://www.tango-controls.org/
https://pan-training.eu/materials/tango-forum-slack
Official Tango-Controls website (where you can access to a forum and to slack to ask questions and get in touch with some experts and other users)
synchrotron control, TANGO, tango-controls, forum, slack
TANGO tutorials
Documentation and tutorials to understand what Tango Controls is, guide your first steps as a user, developer or administrator of Tango.
Keywords: synchrotron control, TANGO, c++, Python, tango-controls, arduino, scada
Resource type: documenation
TANGO tutorials
https://tango-controls.readthedocs.io/en/latest/tutorials-and-howtos/tutorials/index.html
https://pan-training.eu/materials/tango-tutorials
Documentation and tutorials to understand what Tango Controls is, guide your first steps as a user, developer or administrator of Tango.
synchrotron control, TANGO, c++, Python, tango-controls, arduino, scada
Tango Workshop at ICALEPCS 2021
Tango Workshop at ICALEPCS 2021
Keywords: TANGO, tango-controls, TangoBox, conda, conda, debian, ubuntu, docker, windows, CentOS, Tango Source Distribution, PyTango, jtango, jupytango, cpptango, Sardana Configuration Demo, HDB++
Resource type: video
Tango Workshop at ICALEPCS 2021
https://www.youtube.com/watch?v=YkoJI5PyT_Q&list=PL1JZ9U73ypahFdoRpXoRZSHg2UsDEbE5L
https://pan-training.eu/materials/tango-workshop-at-icalepcs-2021
Tango Workshop at ICALEPCS 2021
TANGO, tango-controls, TangoBox, conda, conda, debian, ubuntu, docker, windows, CentOS, Tango Source Distribution, PyTango, jtango, jupytango, cpptango, Sardana Configuration Demo, HDB++
Sardana - Tango Configuration demo
The Sardana 3.4 version including SEP20 introduced a configuration text format based on YAML, and a set of CLI tools for configuring Sardana systems. In this video you will see a short demonstration on how to use them with Tango
Keywords: TANGO, tango-controls, Sardana Configuration Demo, Tango Kernel Webinar
Resource type: video
Sardana - Tango Configuration demo
https://www.youtube.com/watch?v=9oRYRXw-afs
https://pan-training.eu/materials/sardana-tango-configuration-demo
The Sardana 3.4 version including SEP20 introduced a configuration text format based on YAML, and a set of CLI tools for configuring Sardana systems. In this video you will see a short demonstration on how to use them with Tango
TANGO, tango-controls, Sardana Configuration Demo, Tango Kernel Webinar
Tango Kernel Webinar - Taurus - Bonus during break
"Carlos Pascual-Izarra, who has been the main coordinator of Taurus development and maintenance for many years, presents the 5th Tango Kernel Webinar which is dedicated to Taurus.
This is a knowledge-transfer webinar to facilitate other people taking over with Taurus maintenance."
Keywords: taurus, Tango Kernel Webinar
Resource type: video
Tango Kernel Webinar - Taurus - Bonus during break
https://www.youtube.com/watch?v=G20oAeOih2k
https://pan-training.eu/materials/tango-kernel-webinar-taurus-bonus-during-break
"Carlos Pascual-Izarra, who has been the main coordinator of Taurus development and maintenance for many years, presents the 5th Tango Kernel Webinar which is dedicated to Taurus.
This is a knowledge-transfer webinar to facilitate other people taking over with Taurus maintenance."
taurus, Tango Kernel Webinar
Tango Kernel Webinar - Taurus - Part 1
"Carlos Pascual-Izarra, who has been the main coordinator of Taurus development and maintenance for many years, presents the 5th Tango Kernel Webinar which is dedicated to Taurus.
This is a knowledge-transfer webinar to facilitate other people taking over with Taurus maintenance."
Keywords: taurus, Tango Kernel Webinar
Resource type: video
Tango Kernel Webinar - Taurus - Part 1
https://www.youtube.com/watch?v=wmpBqxzqGV4
https://pan-training.eu/materials/tango-kernel-webinar-taurus-part-1
"Carlos Pascual-Izarra, who has been the main coordinator of Taurus development and maintenance for many years, presents the 5th Tango Kernel Webinar which is dedicated to Taurus.
This is a knowledge-transfer webinar to facilitate other people taking over with Taurus maintenance."
taurus, Tango Kernel Webinar
Tango Kernel Webinar - PyTango
This webinar was focused on PyTango - an overview of the project and how to contribute.
Keywords: PyTango, TANGO, Tango Kernel Webinar
Resource type: video
Tango Kernel Webinar - PyTango
https://www.youtube.com/watch?v=cnyJsNV1dBw
https://pan-training.eu/materials/tango-kernel-webinar-pytango
This webinar was focused on PyTango - an overview of the project and how to contribute.
PyTango, TANGO, Tango Kernel Webinar
Tango Kernel Webinar - Tango event system
This webinar focused on the Tango events implementation in cppTango. It was presented by one of the original Tango C++ library developers, Emmanuel Taurel (ESRF - France).
Keywords: TANGO, tango-controls, Event System, Tango Kernel Webinar
Resource type: video
Tango Kernel Webinar - Tango event system
https://www.youtube.com/watch?v=gFUZidSfF9c
https://pan-training.eu/materials/tango-kernel-webinar-tango-event-system
This webinar focused on the Tango events implementation in cppTango. It was presented by one of the original Tango C++ library developers, Emmanuel Taurel (ESRF - France).
TANGO, tango-controls, Event System, Tango Kernel Webinar
Tango Kernel Webinar - Astor and Starter
This webinar focuses on Starter/Astor and Pogo. It is presented by the creator and the main maintainer for many years of all these very useful Tango tools, Pascal Verdier (ESRF - France).
Keywords: tango-controls, Starter and Astor, Tango Kernel Webinar
Resource type: video
Tango Kernel Webinar - Astor and Starter
https://www.youtube.com/watch?v=28M_gBeWJbE
https://pan-training.eu/materials/tango-kernel-webinar-astor-and-starter
This webinar focuses on Starter/Astor and Pogo. It is presented by the creator and the main maintainer for many years of all these very useful Tango tools, Pascal Verdier (ESRF - France).
tango-controls, Starter and Astor, Tango Kernel Webinar