Training materials
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Filter, plot, and explore single cell RNA-seq data with Seurat (R)
paper-replication MIGHTS rmarkdown-notebook jupyter-notebook single-cell-CS-code -
Clustering 3K PBMCs with Scanpy
10x firstsc -
Importing files from public atlases
data import data management datamanipulation -
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell scmultiomics -
Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication MIGHTS jupyter-notebook single-cell-CS-code -
Removing the effects of the cell cycle
tricks -
An introduction to scRNA-seq data analysis
scintroduction -
GO Enrichment Analysis on Single-Cell RNA-Seq Data
single cell GO enrichment exploratory -
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics scmultiomics -
Pseudobulk Analysis with Decoupler and EdgeR
transcriptomics pseudobulk exploratory