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Python Laser Image Visualization

Tool showing pictures from different cameras (directories) in a grid and a stepwise counter-based scroll functionality. Most of the layout and (future) filter options are defined by command line to allow an easy integration into an workflow based on CWL, OWL (or Knime). In future developments...

Keywords: Python, Laser, Visualization, Cameras, Laser Ion Acceleration, Qt5

Resource type: software, git

Python Laser Image Visualization https://pan-training.eu/materials/python-laser-image-visualization Tool showing pictures from different cameras (directories) in a grid and a stepwise counter-based scroll functionality. Most of the layout and (future) filter options are defined by command line to allow an easy integration into an workflow based on CWL, OWL (or Knime). In future developments most of the parameters can be changed interactive and saved to a json file which can be used to describe the next workflow inputs, so that an interactive workflow development is possible. Python, Laser, Visualization, Cameras, Laser Ion Acceleration, Qt5 PaN Community Photon Community
ExPaNDS D5.4 : PaN Training Catalogue Demo Video

Demo video demonstrating the concept and the features of the PaN Training Catalogue as part of ExPaNDS Deliverable 5.4

Keywords: catalogue, expands, deliverable, wp5-ExPaNDS

Resource type: video

ExPaNDS D5.4 : PaN Training Catalogue Demo Video https://pan-training.eu/materials/pan-training-catalogue-demo-video-expands-d5-4 Demo video demonstrating the concept and the features of the PaN Training Catalogue as part of ExPaNDS Deliverable 5.4 catalogue, expands, deliverable, wp5-ExPaNDS
Training Workflow on Terahertz Spectroscopy at TELBE

The radiation source ELBE (Electron Linac for beams with high Brilliance and low Emittance) at the Helmholtz Centre Dresden Rossendorf (HZDR) can produce several kinds of secondary radiations. THz radiation is one of them and can be used with a typical pulse frequency of 100 kHz as a stimulation...

Scientific topics: spectroscopy, THz photon probe

Keywords: terahertz, Higgs, dataset, data analysis, spectroscopy, FAIR, training, TELBE, photon, metadata, TELBE

Resource type: lesson, workflow, training

Training Workflow on Terahertz Spectroscopy at TELBE https://pan-training.eu/materials/terahertz-spectroscopy-workflow The radiation source ELBE (Electron Linac for beams with high Brilliance and low Emittance) at the Helmholtz Centre Dresden Rossendorf (HZDR) can produce several kinds of secondary radiations. THz radiation is one of them and can be used with a typical pulse frequency of 100 kHz as a stimulation source for elementary low-energy degrees of freedom in matter. In this training workflow brings together background information of the experiment, the facility used, as well as the processing techniques and steps to understand the data generated by the experiment: * The open accessible dataset * The software * Services to execute the analysis spectroscopy THz photon probe terahertz, Higgs, dataset, data analysis, spectroscopy, FAIR, training, TELBE, photon, metadata, TELBE PaN Community beamline users graduate students
Full-field Tomography at PSI

This workflow has some details on the instrument the data is produced from (TOMCAT beamline) and the infrastructure PSI has concerning their data. If you are more interested in the science and want to reproduce the data and not bother with the surrounding details/context, please refer to the...

Keywords: synchrotron, imaging, Jupyter notebooks, Python, Pulmonary arterial hypertension

Resource type: workflow

Full-field Tomography at PSI https://pan-training.eu/materials/full-field-tomography-at-psi This workflow has some details on the instrument the data is produced from (TOMCAT beamline) and the infrastructure PSI has concerning their data. If you are more interested in the science and want to reproduce the data and not bother with the surrounding details/context, please refer to the Pulmonary arterial hypertension research workflow. Full-field Tomography at PSI Tomography datasets often present large volumes (100 GBs - few TBs) difficult to compress and transfer. The tomographic reconstruction is highly demanding on compute (GPU) and storage resources for the intermediate and/or final result. In addition, the optional image segmentation step may be demanding on computer memory. The offline analysis (after experiment) could be performed remotely by users at home making it attractive for deployment as a cloud-like use case. Finally, this technique is applied at many facilities and in different scientific domains - therefore a portable result is more useful. This entire process is illustrated with a typical experiment. synchrotron, imaging, Jupyter notebooks, Python, Pulmonary arterial hypertension research data scientist life scientists
Advanced infrastructure for PIDs in Photon and Neutron RIs

This deliverable accumulates results of ExPaNDS works on the topic of persistent identifiers (PIDs) in facilities research. It refers to the substantial effort of persistent identifiers adoption in facilities and in a larger research ecosystem, and provides a general guidance, as well as...

Keywords: persistent identifiers, wp2-ExPaNDS

Resource type: project deliverable

Advanced infrastructure for PIDs in Photon and Neutron RIs https://pan-training.eu/materials/advanced-infrastructure-for-pids-in-photon-and-neutron-ris This deliverable accumulates results of ExPaNDS works on the topic of persistent identifiers (PIDs) in facilities research. It refers to the substantial effort of persistent identifiers adoption in facilities and in a larger research ecosystem, and provides a general guidance, as well as prioritised recommendations for research information practitioners who consider going beyond the current levels of persistent identifiers adoption by photon and neutron research infrastructures. persistent identifiers, wp2-ExPaNDS facility staff scientists
ILL's PhD talks

This YouTube playlist displays the ILL PhD seminars, recorded in winter and spring 2021. We thank all the speakers who have agreed to have their presentation shared in this collection, curated by Valerie Duchasténier and Steph Monfront.

Scientific topics: neutron scattering, small angle neutron scattering, time-of-flight spectrometry, magnetism technique, neutron time of flight technique

Keywords: neutron scattering theorie, neutron transport , monochromization, polarized neutrons, multi grid detectors, guide fields and solenoids, quasi-elastic neutron scattering, Small Angle Neutron Scattering, time-of-flight, magnetism and neutrons, ultra cold neutrons, Nuclear Physics

Resource type: video

ILL's PhD talks https://pan-training.eu/materials/ill-s-phd-talks This YouTube playlist displays the ILL PhD seminars, recorded in winter and spring 2021. We thank all the speakers who have agreed to have their presentation shared in this collection, curated by Valerie Duchasténier and Steph Monfront. neutron scattering small angle neutron scattering time-of-flight spectrometry magnetism technique neutron time of flight technique neutron scattering theorie, neutron transport , monochromization, polarized neutrons, multi grid detectors, guide fields and solenoids, quasi-elastic neutron scattering, Small Angle Neutron Scattering, time-of-flight, magnetism and neutrons, ultra cold neutrons, Nuclear Physics PhD students
Containerized Serial Crystallography “CrystFEL” VISA workflow

Experiments generate up to 150 TB per day of data saved at the measurement facility. Such large datasets are impractical for users to take home. Subsequent analysis needs to be performed remotely making it attractive for deployment as a cloud-like use case. Involving EOSC in the analysis and...

Scientific topics: crystallography

Keywords: CrystFEL, Serial crystallography, pulsed X-ray beam, VISA

Resource type: workflow

Containerized Serial Crystallography “CrystFEL” VISA workflow https://pan-training.eu/materials/containerized-serial-crystallography-crystfel-visa-workflow Experiments generate up to 150 TB per day of data saved at the measurement facility. Such large datasets are impractical for users to take home. Subsequent analysis needs to be performed remotely making it attractive for deployment as a cloud-like use case. Involving EOSC in the analysis and re-use of this data is an appropriate use case. Serial crystallography is a beam-line technique for collecting information on the structure of a protein without growing large protein crystals. Instead, a large number of small protein crystals are held in a pulsed X-ray beam. In a second step, the series of produced images are used to reconstruct a precise 3-D image of the protein structure. Serial crystallography is the preferred technique for obtaining diffraction data of proteins at room temperature, where radiation damage from the X-ray beam starts rapidly. The standard software for analysing serial crystallography is “CrystFEL”. The proposed workflow was rendered in a standard fashion, which would allow it to be easily adopted by arbitrary systems or also other containerized applications. The only requirements are an Apptainer installation on the system and a Docker or Singularity/Apptainer image of the application, as well as an adjustment of the configuration file for the wrapper script. crystallography CrystFEL, Serial crystallography, pulsed X-ray beam, VISA research data scientist scientific
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4 workflows found

  • Laser Image Visualization Training

    This training provides an introduction for the acceleration of intense ion pulses on a few micrometers to 10 MeV energies is possible when light pulses from a short-pulse laser are focused on thin solid-state targets. In the interaction, the laser energy is primarily transferred to relativistic...

  • Pulmonary arterial hypertension research

    This training workflow shows the combination of the demonstrations from the ExPaNDS mid-term review.

    The workflow consist of three steps:

    • Basic material to introduce the problem,
    • The associated dataset with the related scientific publication and
    • Source code and reference to the...

  • Workflow for Adding Training Content

    The workflow describes how content can be added to our ExPaNDS/PaNOSC Training Portal Ecosyste

  • Use Case 3: X-ray absorption spectroscopy

    Here you can find the last oficial slide of UC3.

    Slide of UC 3