The European XFEL: start of user operation
Video from the joint ESRF-ILL colloquia.
In the past decade we have seen very important developments in the field of accelerator based X-ray user facilities, with the advent of 4th generation synchrotron sources and MHz rate free electron lasers. The first hard X-ray free-electron laser,...
Keywords: XFEL, free-electron laser
Resource type: video
The European XFEL: start of user operation
https://www.youtube.com/watch?v=JcM41wYx_Fw
https://pan-training.eu/materials/the-european-xfel-start-of-user-operation
Video from the joint ESRF-ILL colloquia.
In the past decade we have seen very important developments in the field of accelerator based X-ray user facilities, with the advent of 4th generation synchrotron sources and MHz rate free electron lasers. The first hard X-ray free-electron laser, LCLS (US) became operational in 2009 and over the last decade four additional hard X-ray FELs have begun user operation. Among these, the Eu-XFEL is the first hard XFEL powered by a superconducting linear accelerator, which enables MHz rate pulse generation. A specificity of XFELs is their very short pulse duration (10-100fs) opening new scientific opportunities to probe matter at the atomic scale, with chemical selectivity and bulk sensitivity, and at the relevant timescales.
After many years of construction, user operation at the Eu-XFEL ramped up gradually, and between 2017 and 2019 six instruments were delivered to the user community. In this talk I will first briefly introduce the present performance of the facility in terms of electron and photon beam characteristics. I will then give an overview of recent science highlights and comment on some important challenges ahead.
XFEL, free-electron laser
Observation of the transition to metal hydrogen
Video from the joint ESRF-ILL colloquia.
Understanding how and when molecular solid hydrogen may transform into a metal has stimulated many theoretical works since the 30’s.
It is still an opened theoretical question and an experimental challenge. The quest for metal hydrogen has pushed major...
Keywords: metal hydrogen, high pressure, insulator-metal phase transition
Observation of the transition to metal hydrogen
https://www.youtube.com/watch?v=XVt2sOUuNh0
https://pan-training.eu/materials/observation-of-the-transition-to-metal-hydrogen
Video from the joint ESRF-ILL colloquia.
Understanding how and when molecular solid hydrogen may transform into a metal has stimulated many theoretical works since the 30’s.
It is still an opened theoretical question and an experimental challenge. The quest for metal hydrogen has pushed major developments of modern experimental high pressure physics and still various claims of its observation have remained unconfirmed. In 2020, we observed and characterized the transition to metal hydrogen near 425 GPa at 80 K [1]. Very recently, the transition to metal deuterium has also been observed, showing a significant isotopic shift in pressure. In this talk, our experimental strategy will be presented as following three steps namely:
1) Demonstrate the possibility to generate pressures well over 400 GPa ( that is the limit of the conventional Diamond Anvil Cell (DAC)) by loading hydrogen in the recently developed Toroidal-DAC[2];
2) Exhibit a reliable non-intrusive signature of the insulator-metal phase transition, i.e. total IR absorption by using the IR synchrotron radiation at SOLEIL;
3) Record combined infrared, Raman and visible observation measurements to disclose the physics at stake at the insulator-metal transition.
On-going experimental developments to further characterize the intriguing properties of metal hydrogen will be discussed.
[1] Synchrotron infra-red spectroscopic evidence of the probable transition to metal hydrogen. P. Loubeyre, F. Occelli and P. Dumas. Nature 577, 631 (2020).
[2] Toroidal diamond anvil cell for fine measurements under extreme static pressures: data on Al, Ar and Au up to 603 GPa. A. Dewaele, P. Loubeyre, F. Occelli, O. Marie and M. Mezouar. Nature Com. 9, 2913 (2018).
metal hydrogen, high pressure, insulator-metal phase transition
Extended X-ray absorption fine structure (EXAFS) spectroscopy
Synchrotron X-ray techniques for industry R&I:
Extended X-ray absorption fine structure (EXAFS) spectroscopy at the ESRF by Dr Sakura Pascarelli
Scientific topics: extended x-ray absorption fine structure
Keywords: xanes & exafs
Resource type: video
Extended X-ray absorption fine structure (EXAFS) spectroscopy
https://www.youtube.com/watch?v=BTHpau2ok-8
https://pan-training.eu/materials/extended-x-ray-absorption-fine-structure-exafs-spectroscopy
Synchrotron X-ray techniques for industry R&I:
Extended X-ray absorption fine structure (EXAFS) spectroscopy at the ESRF by Dr Sakura Pascarelli
extended x-ray absorption fine structure
xanes & exafs
PaN Community
Small and wide angle X-ray scattering (SAXS & WAXS)
Synchrotron X-ray techniques for industry R&I:
SAXS & WAXS at the ESRF by Dr Michael Sztucki
Scientific topics: small angle x-ray scattering, wide angle x-ray scattering
Keywords: SAXS, WAXS
Resource type: video
Small and wide angle X-ray scattering (SAXS & WAXS)
https://www.youtube.com/watch?v=x_3gEDKy6KQ
https://pan-training.eu/materials/small-and-wide-angle-x-ray-scattering-saxs-waxs
Synchrotron X-ray techniques for industry R&I:
SAXS & WAXS at the ESRF by Dr Michael Sztucki
small angle x-ray scattering
wide angle x-ray scattering
SAXS, WAXS
PaN Community
X-ray fluorescence spectroscopy (XRF)
Synchrotron X-ray techniques for industry R&I:
X-ray fluorescence spectroscopy at the ESRF by Dr Gema Martinez-Criado
Scientific topics: x-ray fluorescence spectroscopy
Keywords: XRF
Resource type: video
X-ray fluorescence spectroscopy (XRF)
https://www.youtube.com/watch?v=-unHRyx0gOE
https://pan-training.eu/materials/x-ray-fluorescence-spectroscopy-xrf
Synchrotron X-ray techniques for industry R&I:
X-ray fluorescence spectroscopy at the ESRF by Dr Gema Martinez-Criado
x-ray fluorescence spectroscopy
XRF
PaN Community
Integrator documentation
Documentation for Integrator, a distributed azimuthal integration software used at the European Synchrotron Radiation Facility (ESRF)
Scientific topics: scattering technique, powder diffraction
Keywords: computation distribution, azimuthal integration, high-performance
Resource type: Document
Integrator documentation
https://www.silx.org/pub/integrator/doc/
https://pan-training.eu/materials/integrator-documentation
Documentation for Integrator, a distributed azimuthal integration software used at the European Synchrotron Radiation Facility (ESRF)
scattering technique
powder diffraction
computation distribution, azimuthal integration, high-performance
Tomo-tools training
Training modules available for the different tomography tools at the European Synchrotron Radiation Facility (ESRF)
Scientific topics: tomography
Keywords: tomography
Resource type: Document
Tomo-tools training
https://tomotools.gitlab-pages.esrf.fr/training
https://pan-training.eu/materials/tomo-tools-training
Training modules available for the different tomography tools at the European Synchrotron Radiation Facility (ESRF)
tomography
tomography
Nabu documentation
Documentation for Nabu, a tomography software used at the European Synchrotron Radiation Facility (ESRF)
Scientific topics: tomography
Keywords: tomography, reconstruction, full-field, phase contrast, high-performance
Resource type: Document
Nabu documentation
https://www.silx.org/pub/nabu/doc/
https://pan-training.eu/materials/nabu-documentation
Documentation for Nabu, a tomography software used at the European Synchrotron Radiation Facility (ESRF)
tomography
tomography, reconstruction, full-field, phase contrast, high-performance
Powder X-ray diffraction phase identification with QualX2*
This video shows how to identify powder X-Ray difraction phases with QualX2*
Scientific topics: powder diffraction
Keywords: Powder Diffraction, QualX2*
Resource type: video
Powder X-ray diffraction phase identification with QualX2*
https://www.youtube.com/watch?v=ui6cA9VoVhA
https://pan-training.eu/materials/powder-x-ray-diffraction-phase-identification-with-qualx2
This video shows how to identify powder X-Ray difraction phases with QualX2*
powder diffraction
Powder Diffraction, QualX2*
Displaying ID21 XANES Spectra with PyMca
This video shows how to display X-Ray Absorption Near Edge Structure (XANES) spectra from ID21 beamline at the ESRF with PyMca
Scientific topics: x-ray absorption near edge structure
Keywords: PyMca, xanes
Resource type: video
Displaying ID21 XANES Spectra with PyMca
https://www.youtube.com/watch?v=7xqT_8RWyPE
https://pan-training.eu/materials/displaying-id21-xanes-spectra-with-pymca
This video shows how to display X-Ray Absorption Near Edge Structure (XANES) spectra from ID21 beamline at the ESRF with PyMca
x-ray absorption near edge structure
PyMca, xanes
Visualising fitted ID21 XRF maps with PyMca
This video shows how to visualise fitted X-Ray Flourescence (XRF) maps from ID21 beamline at the ESRF with PyMca
Scientific topics: x-ray fluorescence
Keywords: PyMca, X-ray fluorescence
Resource type: video
Visualising fitted ID21 XRF maps with PyMca
https://www.youtube.com/watch?v=QVbaBlYTFwg
https://pan-training.eu/materials/visualising-fitted-id21-xrf-maps-with-pymca
This video shows how to visualise fitted X-Ray Flourescence (XRF) maps from ID21 beamline at the ESRF with PyMca
x-ray fluorescence
PyMca, X-ray fluorescence
X-ray diffraction image calibration using PyFAI and Jupyter notebook
"This video shows how to calibrate an X-Ray Diffraction Image using PyFAI and Jupyter Notebook
"
Scientific topics: x-ray diffraction
Keywords: X-ray Diffraction, pyFAI, jupyter notebook
Resource type: video
X-ray diffraction image calibration using PyFAI and Jupyter notebook
https://www.youtube.com/watch?v=j0cphX3z2mM
https://pan-training.eu/materials/x-ray-diffraction-image-calibration-using-pyfai-and-jupyter-notebook
"This video shows how to calibrate an X-Ray Diffraction Image using PyFAI and Jupyter Notebook
"
x-ray diffraction
X-ray Diffraction, pyFAI, jupyter notebook
Processing tomographic data with tomwer software Step 1 - Create the workflow
This video shows how tprocess tomographic data with tomwer (1/4), focusing on creating the workflow
Scientific topics: tomography
Keywords: tomography, tomwer
Resource type: video
Processing tomographic data with tomwer software Step 1 - Create the workflow
https://www.youtube.com/watch?v=OVHGzxZaZ0E
https://pan-training.eu/materials/processing-tomographic-data-with-tomwer-software-step-1-create-the-workflow
This video shows how tprocess tomographic data with tomwer (1/4), focusing on creating the workflow
tomography
tomography, tomwer
"Processing tomographic data with tomwer software Step 4 - Reconstruct volume"
This video shows how tprocess tomographic data with tomwer (4/4), focusing on reconstructing volume
Scientific topics: tomography
Resource type: video
"Processing tomographic data with tomwer software Step 4 - Reconstruct volume"
https://www.youtube.com/watch?v=53XcgiVWQy0
https://pan-training.eu/materials/processing-tomographic-data-with-tomwer-software-step-4-reconstruct-volume
This video shows how tprocess tomographic data with tomwer (4/4), focusing on reconstructing volume
tomography
Processing tomographic data with tomwer software Step 2 - Run the workflow interaction hdf5
This video shows how tprocess tomographic data with tomwer (2/4), focusing on running a workflow interaction hdf5
Scientific topics: tomography
Keywords: tomography, tomwer
Resource type: video
Processing tomographic data with tomwer software Step 2 - Run the workflow interaction hdf5
https://www.youtube.com/watch?v=TllM0LBAb8E
https://pan-training.eu/materials/processing-tomographic-data-with-tomwer-software-step-2-run-the-workflow-interaction-hdf5
This video shows how tprocess tomographic data with tomwer (2/4), focusing on running a workflow interaction hdf5
tomography
tomography, tomwer
"Processing tomographic data with tomwer software Step 3 - Run the workflow automated edf"
This video shows how tprocess tomographic data with tomwer (3/4), focusing on running workflow automated edf
Scientific topics: tomography
Keywords: tomography, tomwer
Resource type: video
"Processing tomographic data with tomwer software Step 3 - Run the workflow automated edf"
https://www.youtube.com/watch?v=w8k9Z2HZW8E
https://pan-training.eu/materials/processing-tomographic-data-with-tomwer-software-step-3-run-the-workflow-automated-edf
This video shows how tprocess tomographic data with tomwer (3/4), focusing on running workflow automated edf
tomography
tomography, tomwer
Darfix: DFXM Data Analysis Tool
This video introduces Darfix, a Python-based data anlaysis package for dark-field X-ray microscopy
Scientific topics: x-ray microscopy
Keywords: Darfix, DFXM, Dark-field X-ray microscopy
Resource type: video
Darfix: DFXM Data Analysis Tool
https://www.youtube.com/watch?v=6X-hK2yuBbU
https://pan-training.eu/materials/darfix-dfxm-data-analysis-tool
This video introduces Darfix, a Python-based data anlaysis package for dark-field X-ray microscopy
x-ray microscopy
Darfix, DFXM, Dark-field X-ray microscopy
PyMca ROI Imaging
This video shows a tutorial on how and why using ROI imaging tool within PyMca
Keywords: PyMca
Resource type: video
PyMca ROI Imaging
https://www.youtube.com/watch?v=1wdt6VhK28Y
https://pan-training.eu/materials/pymca-roi-imaging
This video shows a tutorial on how and why using ROI imaging tool within PyMca
PyMca
Calibration of an X-ray diffraction set-up
This video shows a tutorial on how to calibrate an X-ray diffraction setup using the PyFAI calibration graphical user interface.
Scientific topics: x-ray diffraction
Keywords: pyFAI, X-ray Diffraction, azimuthal integration
Resource type: video
Calibration of an X-ray diffraction set-up
https://www.youtube.com/watch?v=hqp0UyvepXk
https://pan-training.eu/materials/calibration-of-an-x-ray-diffraction-set-up
This video shows a tutorial on how to calibrate an X-ray diffraction setup using the PyFAI calibration graphical user interface.
x-ray diffraction
pyFAI, X-ray Diffraction, azimuthal integration
Tango Controls youtube channel
"Tango-Controls is a free open source device-oriented controls toolkit for controlling any kind of hardware or software and building SCADA systems.
On this channel, you will find Tango-Controls related videos to learn more about it."
Keywords: TANGO, synchrotron control, taurus, pogo, scada, tango-controls
Resource type: video
Tango Controls youtube channel
https://www.youtube.com/@tango-controls
https://pan-training.eu/materials/tango-controls-youtube-channel
"Tango-Controls is a free open source device-oriented controls toolkit for controlling any kind of hardware or software and building SCADA systems.
On this channel, you will find Tango-Controls related videos to learn more about it."
TANGO, synchrotron control, taurus, pogo, scada, tango-controls
Tango Kernel Webinar - cppTango Overview
Tango Kernel webinar is dedicated to cppTango (https://github.com/bourtemb/cppTango), the Tango C++ library.
Keywords: TANGO, tango-controls, cpptango, kernel
Resource type: video
Tango Kernel Webinar - cppTango Overview
https://www.youtube.com/watch?v=iIzP4jaQrzw
https://pan-training.eu/materials/tango-kernel-webinar-cpptango-overview
Tango Kernel webinar is dedicated to cppTango (https://github.com/bourtemb/cppTango), the Tango C++ library.
TANGO, tango-controls, cpptango, kernel
Tango Kernel Webinar - Pogo
This webinar focuses on Starter/Astor and Pogo
Keywords: pogo, TANGO, tango-controls, kernel, code generator
Resource type: video
Tango Kernel Webinar - Pogo
https://www.youtube.com/watch?v=ok-pc6km7kc
https://pan-training.eu/materials/tango-kernel-webinar-pogo
This webinar focuses on Starter/Astor and Pogo
pogo, TANGO, tango-controls, kernel, code generator
Tango Kernel Webinar - Tango event system
This webinar focused on the Tango events implementation in cppTango. It was presented by one of the original Tango C++ library developers, Emmanuel Taurel (ESRF - France).
Keywords: TANGO, tango-controls, Event System, Tango Kernel Webinar
Resource type: video
Tango Kernel Webinar - Tango event system
https://www.youtube.com/watch?v=gFUZidSfF9c
https://pan-training.eu/materials/tango-kernel-webinar-tango-event-system
This webinar focused on the Tango events implementation in cppTango. It was presented by one of the original Tango C++ library developers, Emmanuel Taurel (ESRF - France).
TANGO, tango-controls, Event System, Tango Kernel Webinar
Tango Kernel Webinar - PyTango
This webinar was focused on PyTango - an overview of the project and how to contribute.
Keywords: PyTango, TANGO, Tango Kernel Webinar
Resource type: video
Tango Kernel Webinar - PyTango
https://www.youtube.com/watch?v=cnyJsNV1dBw
https://pan-training.eu/materials/tango-kernel-webinar-pytango
This webinar was focused on PyTango - an overview of the project and how to contribute.
PyTango, TANGO, Tango Kernel Webinar
Tango Kernel Webinar - Taurus - Part 1
"Carlos Pascual-Izarra, who has been the main coordinator of Taurus development and maintenance for many years, presents the 5th Tango Kernel Webinar which is dedicated to Taurus.
This is a knowledge-transfer webinar to facilitate other people taking over with Taurus maintenance."
Keywords: taurus, Tango Kernel Webinar
Resource type: video
Tango Kernel Webinar - Taurus - Part 1
https://www.youtube.com/watch?v=wmpBqxzqGV4
https://pan-training.eu/materials/tango-kernel-webinar-taurus-part-1
"Carlos Pascual-Izarra, who has been the main coordinator of Taurus development and maintenance for many years, presents the 5th Tango Kernel Webinar which is dedicated to Taurus.
This is a knowledge-transfer webinar to facilitate other people taking over with Taurus maintenance."
taurus, Tango Kernel Webinar
Tango Kernel Webinar - Astor and Starter
This webinar focuses on Starter/Astor and Pogo. It is presented by the creator and the main maintainer for many years of all these very useful Tango tools, Pascal Verdier (ESRF - France).
Keywords: tango-controls, Starter and Astor, Tango Kernel Webinar
Resource type: video
Tango Kernel Webinar - Astor and Starter
https://www.youtube.com/watch?v=28M_gBeWJbE
https://pan-training.eu/materials/tango-kernel-webinar-astor-and-starter
This webinar focuses on Starter/Astor and Pogo. It is presented by the creator and the main maintainer for many years of all these very useful Tango tools, Pascal Verdier (ESRF - France).
tango-controls, Starter and Astor, Tango Kernel Webinar
Tango Kernel Webinar - Taurus - Bonus during break
"Carlos Pascual-Izarra, who has been the main coordinator of Taurus development and maintenance for many years, presents the 5th Tango Kernel Webinar which is dedicated to Taurus.
This is a knowledge-transfer webinar to facilitate other people taking over with Taurus maintenance."
Keywords: taurus, Tango Kernel Webinar
Resource type: video
Tango Kernel Webinar - Taurus - Bonus during break
https://www.youtube.com/watch?v=G20oAeOih2k
https://pan-training.eu/materials/tango-kernel-webinar-taurus-bonus-during-break
"Carlos Pascual-Izarra, who has been the main coordinator of Taurus development and maintenance for many years, presents the 5th Tango Kernel Webinar which is dedicated to Taurus.
This is a knowledge-transfer webinar to facilitate other people taking over with Taurus maintenance."
taurus, Tango Kernel Webinar
Sardana - Tango Configuration demo
The Sardana 3.4 version including SEP20 introduced a configuration text format based on YAML, and a set of CLI tools for configuring Sardana systems. In this video you will see a short demonstration on how to use them with Tango
Keywords: TANGO, tango-controls, Sardana Configuration Demo, Tango Kernel Webinar
Resource type: video
Sardana - Tango Configuration demo
https://www.youtube.com/watch?v=9oRYRXw-afs
https://pan-training.eu/materials/sardana-tango-configuration-demo
The Sardana 3.4 version including SEP20 introduced a configuration text format based on YAML, and a set of CLI tools for configuring Sardana systems. In this video you will see a short demonstration on how to use them with Tango
TANGO, tango-controls, Sardana Configuration Demo, Tango Kernel Webinar
Tango Workshop at ICALEPCS 2021
Tango Workshop at ICALEPCS 2021
Keywords: TANGO, tango-controls, TangoBox, conda, conda, debian, ubuntu, docker, windows, CentOS, Tango Source Distribution, PyTango, jtango, jupytango, cpptango, Sardana Configuration Demo, HDB++
Resource type: video
Tango Workshop at ICALEPCS 2021
https://www.youtube.com/watch?v=YkoJI5PyT_Q&list=PL1JZ9U73ypahFdoRpXoRZSHg2UsDEbE5L
https://pan-training.eu/materials/tango-workshop-at-icalepcs-2021
Tango Workshop at ICALEPCS 2021
TANGO, tango-controls, TangoBox, conda, conda, debian, ubuntu, docker, windows, CentOS, Tango Source Distribution, PyTango, jtango, jupytango, cpptango, Sardana Configuration Demo, HDB++
TANGO tutorials
Documentation and tutorials to understand what Tango Controls is, guide your first steps as a user, developer or administrator of Tango.
Keywords: synchrotron control, TANGO, c++, Python, tango-controls, arduino, scada
Resource type: documenation
TANGO tutorials
https://tango-controls.readthedocs.io/en/latest/tutorials-and-howtos/tutorials/index.html
https://pan-training.eu/materials/tango-tutorials
Documentation and tutorials to understand what Tango Controls is, guide your first steps as a user, developer or administrator of Tango.
synchrotron control, TANGO, c++, Python, tango-controls, arduino, scada
TANGO Forum & Slack
Official Tango-Controls website (where you can access to a forum and to slack to ask questions and get in touch with some experts and other users)
Keywords: synchrotron control, TANGO, tango-controls, forum, slack
Resource type: forum
TANGO Forum & Slack
https://www.tango-controls.org/
https://pan-training.eu/materials/tango-forum-slack
Official Tango-Controls website (where you can access to a forum and to slack to ask questions and get in touch with some experts and other users)
synchrotron control, TANGO, tango-controls, forum, slack
Tomwer: How to copy reduced darks and flats
Explain one solution to copy existing reduced darks and flats to be used on another dataset
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, reduced frames, copy, canvas
Resource type: video
Tomwer: How to copy reduced darks and flats
https://www.youtube.com/watch?v=aBLTWmuMTcQ
https://pan-training.eu/materials/tomwer-how-to-copy-reduced-darks-and-flats
Explain one solution to copy existing reduced darks and flats to be used on another dataset
tomography
tomography, tomotools, tomwer, nabu, reduced frames, copy, canvas
Tomwer: How to cast a volume to another type
On this video we explain how user can convert a volume (like HDF5 float32) to another type (like tiff-uint8)
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, volume, casting, canvas
Resource type: video
Tomwer: How to cast a volume to another type
https://www.youtube.com/watch?v=gQRWCsyIm7U
https://pan-training.eu/materials/tomwer-how-to-cast-a-volume-to-another-type
On this video we explain how user can convert a volume (like HDF5 float32) to another type (like tiff-uint8)
tomography
tomography, tomotools, tomwer, nabu, volume, casting, canvas
"Processing tomographic data with tomwer software Step 5 - launch job on slurm"
video on how to launch some nabu job (slice / volume) reconstruction to the slurm-cluster
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, slurm, canvas
Resource type: video
"Processing tomographic data with tomwer software Step 5 - launch job on slurm"
https://www.youtube.com/watch?v=HYufV7Ya9v8
https://pan-training.eu/materials/processing-tomographic-data-with-tomwer-software-step-5-launch-job-on-slurm
video on how to launch some nabu job (slice / volume) reconstruction to the slurm-cluster
tomography
tomography, tomotools, tomwer, nabu, slurm, canvas
How to convert (NXtomo) projections to reduced flats and use it
On this video we explain how to use projections (from an NXtomo) as flats then use them as reduced flats with another dataset.
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, NXtomo, NeXus, reduced frames, edition, canvas
Resource type: video
How to convert (NXtomo) projections to reduced flats and use it
https://www.youtube.com/watch?v=qwmBGes9G_A
https://pan-training.eu/materials/how-to-convert-nxtomo-projections-to-reduced-flats-and-use-it
On this video we explain how to use projections (from an NXtomo) as flats then use them as reduced flats with another dataset.
tomography
tomography, tomotools, tomwer, nabu, NXtomo, NeXus, reduced frames, edition, canvas
Tomwer: Select a volume from dedicated interface
how to use the `volume selector` when you can't or don't want to do a drag and drop
Scientific topics: tomography
Keywords: tomography, tomotools, nabu, tomwer, volume, canvas
Resource type: video
Tomwer: Select a volume from dedicated interface
https://www.youtube.com/watch?v=4-RJKWlP74w
https://pan-training.eu/materials/tomwer-select-a-volume-from-dedicated-interface
how to use the `volume selector` when you can't or don't want to do a drag and drop
tomography
tomography, tomotools, nabu, tomwer, volume, canvas
How to use projections from an NXtomo to be used as (reduced) flats or darks
"In this video we show how to use frames contains in an NXtomo as flats then as reduced flats.
The same process works for other manipulation (as creating reduced darks)"
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, NXtomo, NeXus, reduced frames, edition, canvas
Resource type: video
How to use projections from an NXtomo to be used as (reduced) flats or darks
https://www.youtube.com/watch?v=vJOo0rHHUYk
https://pan-training.eu/materials/how-to-use-projections-from-an-nxtomo-to-be-used-as-reduced-flats-or-darks
"In this video we show how to use frames contains in an NXtomo as flats then as reduced flats.
The same process works for other manipulation (as creating reduced darks)"
tomography
tomography, tomotools, tomwer, nabu, NXtomo, NeXus, reduced frames, edition, canvas
How to edit NXtomo image key
"In this video we show you one dedicated interface to edit `image_key` of a specific NXtomo.
This can allow user to ignore some frames (if image_key is set to zero) or fix some wrong image key."
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, NXtomo, NeXus, edition, image key
Resource type: video
How to edit NXtomo image key
https://www.youtube.com/watch?v=4yrEBrAmwtY
https://pan-training.eu/materials/how-to-edit-nxtomo-image-key
"In this video we show you one dedicated interface to edit `image_key` of a specific NXtomo.
This can allow user to ignore some frames (if image_key is set to zero) or fix some wrong image key."
tomography
tomography, tomotools, tomwer, nabu, NXtomo, NeXus, edition, image key
Tomwer: How to define a volume from a drag and drop
"Explain how user can simply define a volume by a single drag and drop.
* In the case of 'file based volume (like HDF5)' user must drag the 'master file'
* In the case of 'folder baed volume (like EDF, JP2K...)' user must drag the 'master folder'"
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, volume, canvas
Resource type: video
Tomwer: How to define a volume from a drag and drop
https://www.youtube.com/watch?v=R2jJrIZlGY8
https://pan-training.eu/materials/tomwer-how-to-define-a-volume-from-a-drag-and-drop
"Explain how user can simply define a volume by a single drag and drop.
* In the case of 'file based volume (like HDF5)' user must drag the 'master file'
* In the case of 'folder baed volume (like EDF, JP2K...)' user must drag the 'master folder'"
tomography
tomography, tomotools, tomwer, nabu, volume, canvas
Tomwer: How to use 'edf2nx' (convert EDF acquisition to NXtomo)
In this video we explain how to convert EDF acquisitions to NXtomos and the different options related to it.
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, spec, EDF, NXtomo, NeXus, canvas
Resource type: video
Tomwer: How to use 'edf2nx' (convert EDF acquisition to NXtomo)
https://www.youtube.com/watch?v=Xzb_WDiDNsk
https://pan-training.eu/materials/tomwer-how-to-use-edf2nx-convert-edf-acquisition-to-nxtomo
In this video we explain how to convert EDF acquisitions to NXtomos and the different options related to it.
tomography
tomography, tomotools, tomwer, nabu, spec, EDF, NXtomo, NeXus, canvas
Tomwer – add a python script
Tutorial on how user can add their own processing into the workflow through a python script (advanced usage).
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, Python, canvas
Resource type: video
Tomwer – add a python script
https://www.youtube.com/watch?v=VGv628AIgn8
https://pan-training.eu/materials/tomwer-add-a-python-script
Tutorial on how user can add their own processing into the workflow through a python script (advanced usage).
tomography
tomography, tomotools, tomwer, nabu, Python, canvas
Tomwer – semi-automated center of rotation
"Tutorial to explain how to use the `saaxis` widget.
This widget is dedicated to research of center of rotation which is a common bottleneck when reconstructing tomographic dataset.
From it user can launch reconstruction for a serie of center of rotation and the same nabu reconstruction...
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, center of rotation, axis, canvas
Resource type: video
Tomwer – semi-automated center of rotation
https://www.youtube.com/watch?v=G9G55lGuDeA
https://pan-training.eu/materials/tomwer-semi-automated-center-of-rotation
"Tutorial to explain how to use the `saaxis` widget.
This widget is dedicated to research of center of rotation which is a common bottleneck when reconstructing tomographic dataset.
From it user can launch reconstruction for a serie of center of rotation and the same nabu reconstruction settings.
Once reconstructed it compute scores on those reconstruction (like standard deviation, total variation...) to help users find the best value.
Here we show how this process can be automatize"
tomography
tomography, tomotools, tomwer, nabu, center of rotation, axis, canvas
How to edit NXtomo metadata
In this video we will show show you how to edit NXtomo metadata such as beam energy or sample / detector distance.
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, NeXus, NXtomo, edition, canvas
Resource type: video
How to edit NXtomo metadata
https://www.youtube.com/watch?v=KwwCYXnP3YI
https://pan-training.eu/materials/how-to-edit-nxtomo-metadata
In this video we will show show you how to edit NXtomo metadata such as beam energy or sample / detector distance.
tomography
tomography, tomotools, tomwer, nabu, NeXus, NXtomo, edition, canvas
Tomwer – semi-automated delta/beta research
"Tutorial to explain how to use the `sadeltabeta` widget.
This widget is dedicated to research of delta / beta parameter. And use the same structure/mecanism as the `saaxis` widget and offer the same features. This video only show the 'interactive' mode but a 'fully automated' mode exists (see...
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, Paganin, canvas
Resource type: video
Tomwer – semi-automated delta/beta research
https://www.youtube.com/watch?v=A8bZtEwLF7I
https://pan-training.eu/materials/tomwer-semi-automated-delta-beta-research
"Tutorial to explain how to use the `sadeltabeta` widget.
This widget is dedicated to research of delta / beta parameter. And use the same structure/mecanism as the `saaxis` widget and offer the same features. This video only show the 'interactive' mode but a 'fully automated' mode exists (see video done for saaxis if necessary.)"
tomography
tomography, tomotools, tomwer, nabu, Paganin, canvas
Access tomotools from visa.esrf.fr
Short description on how to:
- connect to visa.esrf.fr (the ESRF's Virtual Research Environment)
- create an instance (if needed)
- load 'tomotools' module
- run a simple reconstruction with nabu from CLI
- display the reconstruction with silx view
- unload the module
Scientific topics: tomography
Keywords: tomography, tomotools, nabu, VISA
Resource type: video
Access tomotools from visa.esrf.fr
https://www.youtube.com/watch?v=nERMMj3y64M
https://pan-training.eu/materials/access-tomotools-from-visa-esrf-fr
Short description on how to:
- connect to visa.esrf.fr (the ESRF's Virtual Research Environment)
- create an instance (if needed)
- load 'tomotools' module
- run a simple reconstruction with nabu from CLI
- display the reconstruction with silx view
- unload the module
tomography
tomography, tomotools, nabu, VISA
Tomwer: Axis widget
simple demo of the 'axis widget' used to determine the center of rotation be fore slice reconstruction
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, center of rotation, axis, canvas
Resource type: video
Tomwer: Axis widget
https://www.youtube.com/watch?v=sc3Pmg7zWHQ
https://pan-training.eu/materials/tomwer-axis-widget
simple demo of the 'axis widget' used to determine the center of rotation be fore slice reconstruction
tomography
tomography, tomotools, tomwer, nabu, center of rotation, axis, canvas
Tomwer: Cancelling task
short example on how to cancel a on-going or pending task from the 'object supervisor'
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, task cancellation, canvas
Resource type: video
Tomwer: Cancelling task
https://www.youtube.com/watch?v=MTMtw4oKV0I
https://pan-training.eu/materials/tomwer-cancelling-task
short example on how to cancel a on-going or pending task from the 'object supervisor'
tomography
tomography, tomotools, tomwer, nabu, task cancellation, canvas
Tomwer: Z stitching of reconstructed volumes
Tutorials on how to stitch volumes reconstructed with nabu that have their positions along axis 0 (aka z) changing. Usually called a z-serie.
tomotools
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, stitching, volume
Resource type: video
Tomwer: Z stitching of reconstructed volumes
https://www.youtube.com/watch?v=Yhrde42Xxxs
https://pan-training.eu/materials/tomwer-z-stitching-of-reconstructed-volumes
Tutorials on how to stitch volumes reconstructed with nabu that have their positions along axis 0 (aka z) changing. Usually called a z-serie.
tomotools
tomography
tomography, tomotools, tomwer, nabu, stitching, volume
NXtomo stitching
tutorial on how to stitch NXtomos (projections) together.
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, stitching, NXtomo, projections
Resource type: video
NXtomo stitching
https://www.youtube.com/watch?v=t-VinnwtIfw
https://pan-training.eu/materials/nxtomo-stitching
tutorial on how to stitch NXtomos (projections) together.
tomography
tomography, tomotools, tomwer, nabu, stitching, NXtomo, projections
Tomwer: Slice stack from canvas
How to display a set of slice from the orange canvas
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, volume, projections, NXtomo, canvas
Resource type: video
Tomwer: Slice stack from canvas
https://www.youtube.com/watch?v=3X9ePy8eSg4
https://pan-training.eu/materials/tomwer-slice-stack-from-canvas
How to display a set of slice from the orange canvas
tomography
tomography, tomotools, tomwer, nabu, volume, projections, NXtomo, canvas
Tomwer: Slice stack standalone
How to display a set of slices from the standalone application
Scientific topics: tomography
Keywords: tomography, tomotools, tomwer, nabu, volume, projections, NXtomo
Resource type: video
Tomwer: Slice stack standalone
https://www.youtube.com/watch?v=4xpvQB2DIPk
https://pan-training.eu/materials/tomwer-slice-stack-standalone
How to display a set of slices from the standalone application
tomography
tomography, tomotools, tomwer, nabu, volume, projections, NXtomo
Ewoks tutorial for developers
Learn how to create and execute workflows with Ewoks
Keywords: Ewoks, workflows, tutorial
Resource type: jupyter notebook
Ewoks tutorial for developers
https://ewoksfordevs.readthedocs.io
https://pan-training.eu/materials/ewoks-tutorial-for-developers
Learn how to create and execute workflows with Ewoks
Ewoks, workflows, tutorial
software developers
Training materials on scientific Python programming and silx libraries.
This repository contains some training materials on scientific Python programming and silx libraries.
General topics:
* Introduction to Python and numpy
* Software engineering tools and tips for Python
silx trainings:
* Features of the silx toolkit
* Introduction to Fable Input/Output...
Keywords: Python, Silx, data analysis, data reduction, data visualisation
Training materials on scientific Python programming and silx libraries.
https://github.com/silx-kit/silx-training
https://pan-training.eu/materials/training-materials-on-scientific-python-programming-and-silx-libraries
This repository contains some training materials on scientific Python programming and silx libraries.
General topics:
* Introduction to Python and numpy
* Software engineering tools and tips for Python
silx trainings:
* Features of the silx toolkit
* Introduction to Fable Input/Output (aka. fabio) library"
Python, Silx, data analysis, data reduction, data visualisation
How to share data and logbook with collaborators
How to share data and logbook with collaborators easily
Keywords: data management, open data, Open Science, logbook, sharing, ESRF data portal
How to share data and logbook with collaborators
https://www.youtube.com/watch?v=FDUFPpnllxE
https://pan-training.eu/materials/how-to-share-data-and-logbook-with-collaborators
How to share data and logbook with collaborators easily
data management, open data, Open Science, logbook, sharing, ESRF data portal
How to mint a DOI
How to create a DOI for a specific set of datasets using the ESRF data portal.
Keywords: doi, data management, data object identifier, mint, dataset, data management, open data, Open Science, ESRF data portal
How to mint a DOI
https://www.youtube.com/watch?v=dPeN855-Mu4
https://pan-training.eu/materials/how-to-mint-a-doi
How to create a DOI for a specific set of datasets using the ESRF data portal.
doi, data management, data object identifier, mint, dataset, data management, open data, Open Science, ESRF data portal