Advanced infrastructure for PIDs in Photon and Neutron RIs
This deliverable accumulates results of ExPaNDS works on the topic of persistent identifiers (PIDs) in facilities research. It refers to the substantial effort of persistent identifiers adoption in facilities and in a larger research ecosystem, and provides a general guidance, as well as...
Keywords: persistent identifiers, wp2-ExPaNDS
Resource type: project deliverable
Advanced infrastructure for PIDs in Photon and Neutron RIs
https://zenodo.org/record/5905351#.Yk6-5S8RoeY
https://pan-training.eu/materials/advanced-infrastructure-for-pids-in-photon-and-neutron-ris
This deliverable accumulates results of ExPaNDS works on the topic of persistent identifiers (PIDs) in facilities research. It refers to the substantial effort of persistent identifiers adoption in facilities and in a larger research ecosystem, and provides a general guidance, as well as prioritised recommendations for research information practitioners who consider going beyond the current levels of persistent identifiers adoption by photon and neutron research infrastructures.
persistent identifiers, wp2-ExPaNDS
facility staff
scientists
Delivering data services to EOSC
Wiki page recording the ExPaNDS training workshop on data services for EOSC (06/04/2021)
Keywords: OAI-PMH, metadata, harvesting, SciCat, ICAT, B2FIND, OpenAIRE, research data, wp3-ExPaNDS
Resource type: wiki
Delivering data services to EOSC
https://github.com/ExPaNDS-eu/ExPaNDS/wiki/Delivering-data-services-to-EOSC
https://pan-training.eu/materials/delivering-data-services-to-eosc
Wiki page recording the ExPaNDS training workshop on data services for EOSC (06/04/2021)
OAI-PMH, metadata, harvesting, SciCat, ICAT, B2FIND, OpenAIRE, research data, wp3-ExPaNDS
data curator
research data scientist
FAIR for facilities
Video recording of the workshop providing an overview of FAIR to PaN facilities (01/10/2020)
Keywords: FAIR, research data, wp2-ExPaNDS
Resource type: video
FAIR for facilities
https://vimeo.com/493620481
https://pan-training.eu/materials/fair-for-facilities
Video recording of the workshop providing an overview of FAIR to PaN facilities (01/10/2020)
FAIR, research data, wp2-ExPaNDS
PaN Community
instrument scientist
facility staff
The FAIR Experiment
Video recording of the workshop exploring the FAIR Experiment at PaN facilities (02/10/2020)
Keywords: FAIR, research data, data management, metadata, wp2-ExPaNDS
Resource type: video
The FAIR Experiment
https://vimeo.com/493767139
https://pan-training.eu/materials/the-fair-experiment
Video recording of the workshop exploring the FAIR Experiment at PaN facilities (02/10/2020)
FAIR, research data, data management, metadata, wp2-ExPaNDS
facility staff
instrument scientist
ExPaNDS D2.3: Final data policy framework for Photon and Neutron RIs
ExPaNDS deliverable D2.3: Final data policy framework for photon and neutron RIs, considers how data policies for research infrastructures providing photon and neutron facilities should be framed, in particular in the light of supporting open science and FAIR data. It builds on and revises the...
Keywords: expands, data policy, wp2-ExPaNDS
Resource type: Document
ExPaNDS D2.3: Final data policy framework for Photon and Neutron RIs
https://doi.org/10.5281/zenodo.5205825
https://pan-training.eu/materials/expands-d2-3-final-data-policy-framework-for-photon-and-neutron-ris
ExPaNDS deliverable D2.3: Final data policy framework for photon and neutron RIs, considers how data policies for research infrastructures providing photon and neutron facilities should be framed, in particular in the light of supporting open science and FAIR data. It builds on and revises the initial policy framework presented in ExPaNDS deliverable D2.1: Draft extended data policy framework for photon and neutron RIs.To produce the final, revised version of our data policy framework, ExPaNDS undertook a series of detailed consultation meetings with all ten of our partner PaN RIs. Drawing extensively on quotes from the write ups of those conversations, this report presents the themes that emerged from the consultation, focusing especially on those that featured most often and most strongly.Based on the consultation feedback, we present a revised version of the ExPaNDS data policy framework, which now proposes 21 elements for RIs to consider when formulating data policy.Overall, the consultation provided an opportunity to engage deeply in discussion with ExPaNDS partners about data policy and policy making. The consultation feedback and the level of engagement with the consultation process itself highlight ExPaNDS partners’ strong interest in data policy. There is a clear recognition that having an appropriate data policy is fundamental to supporting good research data management. While some differing views exist, ExPaNDS partners express consensus on key fundamental aspects of the data policy framework, especially the importance of a high level commitment to FAIR data. There is also the strong recognition that flexibility in a data policy framework is vital to accommodating the diversity found across national PaN RIs.As well as incorporating the final version ExPaNDS data policy framework as a key output, our report concludes with two overarching points:Data policy diversity will remain across ExPaNDS partner facilitiesData policy is a powerful and important tool for national PaN RIs.It is clear from the consultation feedback that the ExPaNDS data policy framework is already having an impact on facilities’ plans for future work, especially around ensuring that key implementations are in place to support FAIR data. Further work within ExPaNDS, for example, around PIDs, metadata, and FAIR assessment, will provide guidance to support these activities.
expands, data policy, wp2-ExPaNDS
Machine Learning-based Spectra Classification
Yue Sun presents: Machine Learning-based Spectra Classification at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
Scientific topics: spectroscopy
Keywords: machine learning, XFEL, FAIR, large dataset, NeXus, spectroscopy, wp5-ExPaNDS
Resource type: video, slides
Machine Learning-based Spectra Classification
https://zenodo.org/record/5636331/files/20211026-PaN-EOSC-Symposium2021-YueSun-UseCase.pdf?download=1
https://pan-training.eu/materials/machine-learning-based-spectra-classification
Yue Sun presents: Machine Learning-based Spectra Classification at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
spectroscopy
machine learning, XFEL, FAIR, large dataset, NeXus, spectroscopy, wp5-ExPaNDS
PaN Community
scientists
DOI, FAIR and MX COVID-19 use case
Frank von Delft presents: DOI, FAIR and MX COVID-19 use case at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
Keywords: COVID research, FAIR, fragalysis, drug development, XChem, PDB, zenodo, wp5-ExPaNDS
Resource type: video, slides
DOI, FAIR and MX COVID-19 use case
https://zenodo.org/record/5636331/files/20211026-PaN-EOSC-Symposium2021-Frank-vonDelft-DiamondMX-UseCase.pdf?download=1
https://pan-training.eu/materials/doi-fair-and-mx-covid-19-use-case
Frank von Delft presents: DOI, FAIR and MX COVID-19 use case at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
COVID research, FAIR, fragalysis, drug development, XChem, PDB, zenodo, wp5-ExPaNDS
Photon & Neutron EOSC Symposium (November 2020)
Recording of the "Photon and Neutron EOSC Symposium" that happened on November 9th 2020.
Keywords: expands, EOSC, PaNOSC, FAIR, CXIDB, symposium
Resource type: video
Photon & Neutron EOSC Symposium (November 2020)
https://www.youtube.com/watch?v=AXMhurOSeiY
https://pan-training.eu/materials/photon-neutron-eosc-symposium-november-2020
Recording of the "Photon and Neutron EOSC Symposium" that happened on November 9th 2020.
expands, EOSC, PaNOSC, FAIR, CXIDB, symposium
PaN Community
ExPaNDS and PaNOSC project members
ExPaNDS mapping dcat ontology and Nexus
Different communities have developed their terminology and are maintaining their metadata schemata or lists of vocabulary. In order to facilitate sharing of data across communities and allow collaboration between heterogeneous systems, interoperability of these vocabularies is required. In ...
Keywords: expands, ontology, mapping, NeXus, DCAT, semantic integration, wp3-ExPaNDS
Resource type: git, tool
ExPaNDS mapping dcat ontology and Nexus
https://github.com/ExPaNDS-eu/ExPaNDS-nexus-dcat-mapping-ontology
https://pan-training.eu/materials/expands-mapping-dcat-ontology-and-nexus
Different communities have developed their terminology and are maintaining their metadata schemata or lists of vocabulary. In order to facilitate sharing of data across communities and allow collaboration between heterogeneous systems, interoperability of these vocabularies is required. In order to increase data interoperability and enable data integration, these vocabularies need to be semantically integrated with other vocabularies and their terms have to be aligned. This enables the development of a common shared vocabulary.
expands, ontology, mapping, NeXus, DCAT, semantic integration, wp3-ExPaNDS
PaN Community
ExPaNDS D3.2: Ontologies v1.0
We present ontologies for the domain of photon and neutron (PaN) science. With the primary goal of supporting PaN FAIR data catalogue services, we have developed three ontologies: PaN experimental techniques (PaNET), an ontology of NeXus definitions (NeXusOntology), and a semantic integration...
Keywords: expands, ontology, EOSC, Photon science, experimental techniques, Neutron science, deliverable, D3.2, wp3-ExPaNDS
Resource type: Document
ExPaNDS D3.2: Ontologies v1.0
https://doi.org/10.5281/zenodo.4806026
https://pan-training.eu/materials/expands-d3-2-ontologies
We present ontologies for the domain of photon and neutron (PaN) science. With the primary goal of supporting PaN FAIR data catalogue services, we have developed three ontologies: PaN experimental techniques (PaNET), an ontology of NeXus definitions (NeXusOntology), and a semantic integration ontology for the PaN domain (PaNmapping). The ontologies are presented as initial versions, supported by community development workflows. The work represents deliverable D3.2 of the Horizon 2020 ExPaNDS project.
expands, ontology, EOSC, Photon science, experimental techniques, Neutron science, deliverable, D3.2, wp3-ExPaNDS
Joint Public Session ExPaNDS/PaNOSC on metadata catalogues (SciCat implementation) and future perspectives
Presentations from public joint WP3 Meeting for ExPaNDS and PaNOSC, which took place in hybrid format from SOLEIL (France) and via Zoom on the 3rd November 2022.
A recording of the event can be found on the ExPaNDS website: https://expands.eu/presentations/
Video recording (direct link to...
Keywords: expands, PaNOSC, open data, wp3-ExPaNDS
Resource type: slides
Joint Public Session ExPaNDS/PaNOSC on metadata catalogues (SciCat implementation) and future perspectives
https://expands.eu/presentations/#WP3PublicMeeting
https://pan-training.eu/materials/work-package-3-public-meeting
Presentations from public joint WP3 Meeting for ExPaNDS and PaNOSC, which took place in hybrid format from SOLEIL (France) and via Zoom on the 3rd November 2022.
A recording of the event can be found on the ExPaNDS website: https://expands.eu/presentations/
Video recording (direct link to vimeo) will be available soon.
expands, PaNOSC, open data, wp3-ExPaNDS
data managers
Beamline FAIRness Assessment Presentation
The presentation which took place on the 15th November 2021, organised by the ExPaNDS project where Markus Kubin and Gerrit Guenther gave an overview of "Assessing the FAIRness of a prototypical PaN instrument at BESSY II".
Keywords: BESSY II, FAIR, expands, open data, wp2-ExPaNDS
Resource type: video, slides
Beamline FAIRness Assessment Presentation
https://vimeo.com/647450948
https://pan-training.eu/materials/beamline-fairness-assessment-presentation
The presentation which took place on the 15th November 2021, organised by the ExPaNDS project where Markus Kubin and Gerrit Guenther gave an overview of "Assessing the FAIRness of a prototypical PaN instrument at BESSY II".
BESSY II, FAIR, expands, open data, wp2-ExPaNDS
Librarian Symposium
Our Librarian Symposium was aimed at librarians and data managers who work with and support PaN science facilities. In particular, the symposium focused on the interface between publications and data. How can we bring these together better for the benefit of all? Where are the gaps? What do we...
Keywords: expands, open data, persistent identifiers, pid, PUMA project, publishing experiments, F-UJI tool, FAIR, FAIR metrics, wp2-ExPaNDS
Resource type: video, slides
Librarian Symposium
https://vimeo.com/675857001
https://pan-training.eu/materials/librarian-symposium-am-session
Our Librarian Symposium was aimed at librarians and data managers who work with and support PaN science facilities. In particular, the symposium focused on the interface between publications and data. How can we bring these together better for the benefit of all? Where are the gaps? What do we need to bridge them?
Watch our video recordings for the AM and PM sessions, you can also find our report and presentations below.
expands, open data, persistent identifiers, pid, PUMA project, publishing experiments, F-UJI tool, FAIR, FAIR metrics, wp2-ExPaNDS
librarians
data managers
data curator
Persistent Identifiers for Facilities Research Workshop
Our workshop on Persistent Identifiers (PIDs) reflected on practices of PIDs used in facilities research, an update on state-of-the art and recent developments about PIDs elsewhere and discussions around the actual and desired levels of PIDs adoption across facilities research lifecycle.
You...
Keywords: pid, persistent identifiers, expands, wp2-ExPaNDS
Resource type: video, slides
Persistent Identifiers for Facilities Research Workshop
https://vimeo.com/676015892
https://pan-training.eu/materials/persistent-identifiers-for-facilities-research-workshop
Our workshop on Persistent Identifiers (PIDs) reflected on practices of PIDs used in facilities research, an update on state-of-the art and recent developments about PIDs elsewhere and discussions around the actual and desired levels of PIDs adoption across facilities research lifecycle.
You can read our report and view the presentations in the links below.
pid, persistent identifiers, expands, wp2-ExPaNDS
facility staff
Describe data by scripts for future reuse
Petr Čermák presents: Describe data by scripts for future reuse at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
Keywords: metadata, open data, FAIR, figshare, binder, data processing, wp5-ExPaNDS
Resource type: video, slides
Describe data by scripts for future reuse
https://zenodo.org/record/5636331/files/20211026-PaN-EOSC-Symposium2021-PetrCermak-UseCase.pdf?download=1
https://pan-training.eu/materials/describe-data-by-scripts-for-future-reuse
Petr Čermák presents: Describe data by scripts for future reuse at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
metadata, open data, FAIR, figshare, binder, data processing, wp5-ExPaNDS
Tomography Case Study
Kamel Madi presents: Tomography Case Study at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
Keywords: tomography, pid, doi, FAIR, large dataset, 3Dmagination, wp5-ExPaNDS
Resource type: video, slides
Tomography Case Study
https://zenodo.org/record/5636331/files/20211026-PaN-EOSC-Symposium2021-KamelMadi-3DmaginationAthena.pdf?download=1
https://pan-training.eu/materials/tomography-case-study
Kamel Madi presents: Tomography Case Study at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
tomography, pid, doi, FAIR, large dataset, 3Dmagination, wp5-ExPaNDS
2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021)
Recording of the "2nd PaNOSC and ExPaNDS PaN EOSC Symposium" that happened on 26th October 2021.
Keywords: expands, EOSC, PaNOSC, FAIR, symposium, wp5-ExPaNDS
Resource type: video
2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021)
https://vimeo.com/647369833
https://pan-training.eu/materials/2nd-panosc-and-expands-pan-eosc-symposium-october-2021
Recording of the "2nd PaNOSC and ExPaNDS PaN EOSC Symposium" that happened on 26th October 2021.
expands, EOSC, PaNOSC, FAIR, symposium, wp5-ExPaNDS
PaN Community
ExPaNDS and PaNOSC project members
Active DMPs for Photon and Neutron RIs
This deliverable envisions an integrated aDMP system which supports the (semi-)
automated generation of DMPs by maximising reuse of information generated during the
research life-cycle and also aiming to support the scientists and other stakeholders by
supporting information transfer....
Keywords: expands, wp2-ExPaNDS, DMP, data management plan, data management
Resource type: Document
Active DMPs for Photon and Neutron RIs
https://zenodo.org/record/7223438
https://pan-training.eu/materials/active-dmps-for-photon-and-neutron-ris
This deliverable envisions an integrated aDMP system which supports the (semi-)
automated generation of DMPs by maximising reuse of information generated during the
research life-cycle and also aiming to support the scientists and other stakeholders by
supporting information transfer. Therefore, a data model for aDMPs focusing on the
integration of information that exists before a proposal is submitted and its life-cycle
integration is introduced. It relates the data model also to the template created in PaNOSC.
expands, wp2-ExPaNDS, DMP, data management plan, data management
PaN Community
ExPaNDS Photon and Neutron Experimental Techniques (PaNET) ontology
The Photon and Neutron Experimental Technique (PaNET) ontology provides a taxonomy of experimental techniques relevant for the Photon and Neutron (PaN) community. This ontology is being developed as part of the Work Package 3 on EOSC Data Catalogue Services for PaN national Research...
Keywords: panet, expands, ontology, experimental techniques, wp3-ExPaNDS
Resource type: git, tool
ExPaNDS Photon and Neutron Experimental Techniques (PaNET) ontology
https://github.com/ExPaNDS-eu/ExPaNDS-experimental-techniques-ontology
https://pan-training.eu/materials/expands-photon-and-neutron-experimental-techniques-panet-ontology
The Photon and Neutron Experimental Technique (PaNET) ontology provides a taxonomy of experimental techniques relevant for the Photon and Neutron (PaN) community. This ontology is being developed as part of the Work Package 3 on EOSC Data Catalogue Services for PaN national Research Infrastructures of the ExPaNDS project.
The ontology allows to add semantic tags to datasets, and other related research objects, to indicate the experimental technique(s) that was (or were) used to create them.
panet, expands, ontology, experimental techniques, wp3-ExPaNDS
PaN Community
Develop common rules and best practices between national RI’s and harmonize the provision of the EOSC services
Slides (and other resources) of the presentations done at this workshop.
How is ExPaNDS delivering its data services to PaNOSC and EOSC?
- Day 1. Data catalogues: getting our open datasets harvested by the community
- Day 2. Data analysis: getting our software in the PaN software...
Keywords: expands, workshop, SciCat, ICAT, B2FIND, OpenAIRE, EOSC, OAI-PMH, data catalogue, wp1-ExPaNDS
Develop common rules and best practices between national RI’s and harmonize the provision of the EOSC services
https://indico.desy.de/event/29297/
https://pan-training.eu/materials/develop-common-rules-and-best-practices-between-national-ri-s-and-harmonize-the-provision-of-the-eosc-services
Slides (and other resources) of the presentations done at this workshop.
How is ExPaNDS delivering its data services to PaNOSC and EOSC?
- Day 1. Data catalogues: getting our open datasets harvested by the community
- Day 2. Data analysis: getting our software in the PaN software catalogue, getting pipelines to run, ensuring their quality over time
expands, workshop, SciCat, ICAT, B2FIND, OpenAIRE, EOSC, OAI-PMH, data catalogue, wp1-ExPaNDS
PaN Community
ExPaNDS and PaNOSC project members
TELBE data analysis workflow and the PaN training platform UX
Jan-Christoph Deinert presents: TELBE data analysis workflow and the PaN training platform UX at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
Keywords: training platform, workflow, TELBE, FAIR, data correction, wp5-ExPaNDS
Resource type: video, slides
TELBE data analysis workflow and the PaN training platform UX
https://zenodo.org/record/5636331/files/20211026-PaN-EOSC-Symposium2021-JanChristophDeiner-TELBE-UseCase.pdf
https://pan-training.eu/materials/telbe-data-analysis-workflow-and-the-pan-training-platform-ux
Jan-Christoph Deinert presents: TELBE data analysis workflow and the PaN training platform UX at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
training platform, workflow, TELBE, FAIR, data correction, wp5-ExPaNDS
Neutron diffraction from Boro-carbon for efficient structural analysis and defect detection
Mousumi Upadhyay Kahaly presents: Neutron diffraction from Boro-carbon for efficient structural analysis and defect detection at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
Scientific topics: neutron diffraction, inelastic scattering
Keywords: McStas, simulation, inelastic neutron scattering, ab-initio, neutron scattering, neutron, neutron diffraction, defect detection, structural analysis, wp5-ExPaNDS
Resource type: video, slides
Neutron diffraction from Boro-carbon for efficient structural analysis and defect detection
https://zenodo.org/record/5636331/files/20211026-PaN-EOSC-Symposium2021-MousumiUpadhyayKahaly-UseCase.pdf?download=1
https://pan-training.eu/materials/neutron-diffraction-from-boro-carbon-for-efficient-structural-analysis-and-defect-detection
Mousumi Upadhyay Kahaly presents: Neutron diffraction from Boro-carbon for efficient structural analysis and defect detection at the 2nd PaNOSC and ExPaNDS PaN EOSC Symposium (October 2021).
neutron diffraction
inelastic scattering
McStas, simulation, inelastic neutron scattering, ab-initio, neutron scattering, neutron, neutron diffraction, defect detection, structural analysis, wp5-ExPaNDS
PaN Community
scientists
ExPaNDS Guidance Note: Key Policy Elements within a Photon and Neutron Research Infrastructure Data Policy Framework (revised - final version)
The text of this ExPaNDS Guidance Note is extracted from ExPaNDS deliverable [D2.3: Final data policy framework for Photon and Neutron RIs](https://doi.org/10.5281/zenodo.5205824). The Guidance Note covers the 21 elements that comprise the final version of the ExPaNDS data policy framework. These...
Keywords: data policy, expands, FAIR, wp2-ExPaNDS
Resource type: Document
ExPaNDS Guidance Note: Key Policy Elements within a Photon and Neutron Research Infrastructure Data Policy Framework (revised - final version)
https://doi.org/10.5281/zenodo.6090282
https://pan-training.eu/materials/expands-guidance-note-key-policy-elements-within-a-photon-and-neutron-research-infrastructure-data-policy-framework-revised-final-version
The text of this ExPaNDS Guidance Note is extracted from ExPaNDS deliverable [D2.3: Final data policy framework for Photon and Neutron RIs](https://doi.org/10.5281/zenodo.5205824). The Guidance Note covers the 21 elements that comprise the final version of the ExPaNDS data policy framework. These elements fall under nine broad themes:
1. General drivers and principles
2. Roles and responsibilities
3. Scope
4. Enabling FAIR data
5. Necessary restrictions to data sharing
6. Availability of infrastructure and responsibility for costs
7. Data management planning requirements
8. Recognition and reward for data usage
9. Reporting requirements, compliance monitoring, and any possible sanctions
The Guidance Note is intended as a short-form, ready-access tool for policy makers working on data policy within Photon and Neutron Research Infrastructures. For additional context around the development of the ExPaNDS data policy framework, see the D2.3 deliverable and its earlier, draft version [D2.1: Draft extended data policy framework for photon and neutron RIs](https://doi.org/10.5281/zenodo.4014811).
data policy, expands, FAIR, wp2-ExPaNDS
ExPaNDS NeXusOntology
NeXusOntology: Machine-readable ontology of the NeXus definitions.
The published ontology describes the NeXus standard, it does not define the standard.
This ontology extracts information about NeXus classes and fields from NeXus nxdl definition files on the NeXus GitHub site.
This...
Keywords: NeXus, ontology, expands, wp3-ExPaNDS
Resource type: git, tool
ExPaNDS NeXusOntology
https://github.com/nexusformat/NeXusOntology/tree/main
https://pan-training.eu/materials/expands-nexusontology-machine-readable-ontology-of-the-nexus-definitions
NeXusOntology: Machine-readable ontology of the NeXus definitions.
The published ontology describes the NeXus standard, it does not define the standard.
This ontology extracts information about NeXus classes and fields from NeXus nxdl definition files on the NeXus GitHub site.
This project was undertaken under ExPaNDS WP3.2.
The ontology is designed to fulfil several purposes. First, it creates unique identifiers for each of the NeXus fields which would normally exist only within the namespaces of the defining NeXus classes. This is the primary goal and provides PIDs for annotation and tagging. The second purpose is to allow, via separate ontologies, NeXus fields and classes to be mapped onto equivalent or related terms defined elsewhere.
Finally, we hope that this ontology, when used with a tool such as Protege, will provide a useful 'NeXus Explorer' tool to gain a quick overview of NeXus with links to official NeXus documentation.
NeXus, ontology, expands, wp3-ExPaNDS
PaN Community
Draft recommendations for FAIR Photon and Neutron Data Management
ExPaNDS WP2 has the objective of Enabling FAIR Data, providing guidelines, recommendation and practical experience to the project and the wider PaN community on the best practise in generating FAIR experimental data for National RIs. In order for the facility to deliver experimental data “FAIR at...
Keywords: FAIR, metadata, expands, experimental lifecycle, wp2-ExPaNDS
Resource type: Document
Draft recommendations for FAIR Photon and Neutron Data Management
https://zenodo.org/record/4312825#.X-DBT9j7SUk
https://pan-training.eu/materials/draft-recommendations-for-fair-photon-and-neutron-data-management
ExPaNDS WP2 has the objective of Enabling FAIR Data, providing guidelines, recommendation and practical experience to the project and the wider PaN community on the best practise in generating FAIR experimental data for National RIs. In order for the facility to deliver experimental data “FAIR at the point of leaving the facility”, the infrastructure systems and procedures involved in the facilities experimental lifecycle should be coordinated to construct and maintain the FAIRness of that data. In particular, at each stage in the experimental lifecycle, metadata and contextual information should be collected (automatically and manually) to form as complete a record as possible of the experiment so that that data can be FAIR.
In this report, we give an analysis of the metadata that should be generated and recorded at each stage of the lifecycle and consider its contribution to making that data FAIR. This delivers a prioritization which we use to determine which metadata should be collected. We use that prioritization to make a series of recommendations on the types of metadata that should be collected at each stage. These recommendations give a framework for setting standards for common metadata formats and provide a basis for assessing the FAIRness of data generated by facilities. Further work will develop these draft recommendations into our final recommendations for common metadata formats and use of metadata in practice.
FAIR, metadata, expands, experimental lifecycle, wp2-ExPaNDS
PaN Community
ExPaNDS and PaNOSC project members
Final recommendations for FAIR Photon and Neutron Data Management
The present deliverable pursues the work initiated in ExPaNDS deliverable 2.2, which established a common metadata framework for FAIR data generated in Photon and Neutron (PaN) facilities. The modalities of implementation of this framework across facilities are examined and current practices and...
Keywords: expands, wp2-ExPaNDS, FAIR, data management
Resource type: Document
Final recommendations for FAIR Photon and Neutron Data Management
https://zenodo.org/record/6821676#.YwiWdnHP02w
https://pan-training.eu/materials/final-recommendations-for-fair-photon-and-neutron-data-management
The present deliverable pursues the work initiated in ExPaNDS deliverable 2.2, which established a common metadata framework for FAIR data generated in Photon and Neutron (PaN) facilities. The modalities of implementation of this framework across facilities are examined and current practices and tools for metadata capture, storage and exposure are highlighted. This work is also the occasion to examine the commonalities of the framework with other initiatives developed inside and outside ExPaNDS such as the common search API, the data catalogues (ExPaNDS WP3), the EOSC discovery platforms B2FIND and OpenAire as well as the NeXus data format. It also provides the reader with guidelines on current tools and schemata available to record provenance and digital preservation information. The essence of these discussions is summarised as a list of practical recommendations at the end.
expands, wp2-ExPaNDS, FAIR, data management
PaN Community
Virtual Infrastructure for Scientific Analysis (VISA) Workshop
We invite you to view our workshop – hosted jointly by ExPaNDS and PaNOSC!
VISA provides remote data analysis services giving access to experimental data, analysis software, compute infrastructure and expert-user support (IT and Scientific). The online half-day Workshop is open to all external...
Keywords: VISA, expands, PaNOSC, remote data analysis services
Resource type: slides
Virtual Infrastructure for Scientific Analysis (VISA) Workshop
https://expands.eu/presentations/#VISAWorkshop
https://pan-training.eu/materials/virtual-infrastructure-for-scientific-analysis-visa-workshop
We invite you to view our workshop – hosted jointly by ExPaNDS and PaNOSC!
VISA provides remote data analysis services giving access to experimental data, analysis software, compute infrastructure and expert-user support (IT and Scientific). The online half-day Workshop is open to all external stakeholders (especially scientists and IT staff but not limited to). We aim to demonstrate to beamline scientists the possibilities offered by VISA for data analysis and gathering IT staff around the table to discuss about the development and further deployment of the platform.
VISA has been developed at a critical time (during the COVID-19 crisis) to answer data analysis needs and allowing remote instrument control. It provides simplified access for scientists to data analysis tools, offers remote support to users from experts and allows them to remotely control their experiments with the assistance of on-site instrument scientists. VISA allows a user to use the Remote Desktop as if they were sitting in front a data treatment workstation at the host institute and embeds JupyterLab directly accessible from the same platform interface. Initially developed at the Institut Laue-Langevin (ILL) in Grenoble, France and further deployed in the context of PaNOSC, VISA enables the PaN research infrastructures (PaN RIs) to work together on further scientific collaborations to solve 21st century challenges.
The first session of the workshop showcases the implementation of VISA at the PaN RIs through ExPaNDS and PaNOSC partner’ demos and illustrate its use for scientific users and others.
The second session in the afternoon focuses on presentations on VISA development and deployment (on OpenStack and other infrastructures), paving the way for a roundtable discussion on the future of VISA: sustainability and future collaborations.
Video recording (direct link to vimeo) will be available soon.
VISA, expands, PaNOSC, remote data analysis services
Self-evaluation Photon and Neutron RIs for FAIR data certification
This ExPaNDS project deliverable describes a FAIR self-assessment undertaken by the ten
ExPaNDS partner Photon and Neutron Research Infrastructures (PaN RIs) over the
three-month period July – September 2022. After reviewing selected examples of existing
FAIR evaluation frameworks designed to...
Keywords: FAIR, metadata, expands, European Photon and Neutron facilities , wp2-ExPaNDS
Resource type: Document
Self-evaluation Photon and Neutron RIs for FAIR data certification
https://zenodo.org/record/7246802
https://pan-training.eu/materials/self-evaluation-photon-and-neutron-ris-for-fair-data-certification
This ExPaNDS project deliverable describes a FAIR self-assessment undertaken by the ten
ExPaNDS partner Photon and Neutron Research Infrastructures (PaN RIs) over the
three-month period July – September 2022. After reviewing selected examples of existing
FAIR evaluation frameworks designed to enable assessment at different levels (dataset,
repository, and organisation), the report describes the evaluation approach adopted for the
ExPaNDS FAIR self-assessment. As no existing framework met our specific need to focus
on FAIR workflows and processes in PaN RIs, it was necessary to select, combine, and
adapt existing frameworks. Supported by four underlying guiding principles, our approach
drew heavily on the FAIR Principles, the RDA FAIR Data Maturity Model, and FAIRsFAIR’s
CoreTrustSeal+FAIRenabling framework. Post-evaluation feedback from ExPaNDS partners
indicated that they found the FAIR self-assessment a useful and valuable exercise for
understanding current levels of FAIRness at their facilities and for articulating what
implementations they have in progress or planned to support FAIR in future. A key output of
the ExPaNDS FAIR evaluation is the collected self-assessment reports from the ten partner
facilities. These reports are published openly and in full as part of the deliverable. In addition,
the self-assessments are supplemented with some high-level observations on the state of
the FAIR journey across the ExPaNDS facilities.
FAIR, metadata, expands, European Photon and Neutron facilities , wp2-ExPaNDS
PaN Community
FAIR Metadata Workshop
Presentation of the ExPaNDS draft metadata framework for FAIR Photon and Neutron (PaN) data.
Keywords: FAIR, metadata, wp2-ExPaNDS
Resource type: video
FAIR Metadata Workshop
https://vimeo.com/685211186
https://pan-training.eu/materials/fair-metadata-workshop
Presentation of the ExPaNDS draft metadata framework for FAIR Photon and Neutron (PaN) data.
FAIR, metadata, wp2-ExPaNDS
PaN Community
ExPaNDS and PaNOSC project members
Report on status, gap analysis and roadmap towards harmonised and federated metadata catalogues for EU national Photon and Neutron RIs
Report on status, gap analysis and roadmap towards harmonised and federated metadata catalogues for EU national Photon and Neutron RIs
Keywords: expands, D3.1, wp3-ExPaNDS
Resource type: Document
Report on status, gap analysis and roadmap towards harmonised and federated metadata catalogues for EU national Photon and Neutron RIs
https://zenodo.org/record/4146819
https://pan-training.eu/materials/report-on-status-gap-analysis-and-roadmap-towards-harmonised-and-federated-metadata-catalogues-for-eu-national-photon-and-neutron-ris
Report on status, gap analysis and roadmap towards harmonised and federated metadata catalogues for EU national Photon and Neutron RIs
expands, D3.1, wp3-ExPaNDS
ExPaNDS and PaNOSC project members
Metadata Catalogue Release
Self-contained, stand-alone metadata catalogue release that facilities can download to test/try and play with.
Keywords: ICAT, SciCat, PaNOSC, data catalogue, expands, wp3-ExPaNDS
Resource type: docker, docker-compose, software, git
Metadata Catalogue Release
https://zenodo.org/record/5205909#.YYE4fb_MKV5
https://pan-training.eu/materials/metadata-catalogue-release
Self-contained, stand-alone metadata catalogue release that facilities can download to test/try and play with.
ICAT, SciCat, PaNOSC, data catalogue, expands, wp3-ExPaNDS
PaN Community
ExPaNDS and PaNOSC project members
engineers
research data engineer
Demonstrate ICAT and SciCat released with APIs compatible with ExPaNDS federated EOSC services
Demonstration release of ICAT and SciCat with APIs compatible with ExPaNDS federated EOSC services and its connection to milestone Metadata catalogue as EOSC service in the domain of photon and neutron (PaN) science
Keywords: D3.3, wp3-ExPaNDS
Demonstrate ICAT and SciCat released with APIs compatible with ExPaNDS federated EOSC services
https://zenodo.org/record/6363591
https://pan-training.eu/materials/demonstrate-icat-and-scicat-released-with-apis-compatible-with-expands-federated-eosc-services
Demonstration release of ICAT and SciCat with APIs compatible with ExPaNDS federated EOSC services and its connection to milestone Metadata catalogue as EOSC service in the domain of photon and neutron (PaN) science
D3.3, wp3-ExPaNDS
PaNET implementation by the pan-ontologies-API RESTful service
The application provides a data catalogue independent implementation retrieval and processing of ontologies from an external source. Currently, only the PaNET ontology is implemented. Below is a schematic data flow depicting the role of the pan-ontologies-api.
Keywords: expands, PaNOSC, data catalogue, ontology, wp3-ExPaNDS
Resource type: git, github, Git Project
PaNET implementation by the pan-ontologies-API RESTful service
https://github.com/ExPaNDS-eu/pan-ontologies-api
https://pan-training.eu/materials/pan-ontologies-api
The application provides a data catalogue independent implementation retrieval and processing of ontologies from an external source. Currently, only the PaNET ontology is implemented. Below is a schematic data flow depicting the role of the pan-ontologies-api.
expands, PaNOSC, data catalogue, ontology, wp3-ExPaNDS
PaN Community
ExPaNDS and PaNOSC project members
ExPaNDS mid-term review
Slides of the presentations done during the ExPaNDS midterm review.
Keywords: expands
Resource type: slides
ExPaNDS mid-term review
https://indico.desy.de/event/30039/
https://pan-training.eu/materials/expands-mid-term-review
Slides of the presentations done during the ExPaNDS midterm review.
expands
ExPaNDS and PaNOSC project members
Workshop on Metadata Catalogues
Presentations from the Workshop on Metadata Catalogues, which took place virtually via Zoom on the 4th April 2022.
Keywords: data catalogue, SciCat, ICAT, expands, panet, PaNOSC, metadata, data management, data processing, wp3-ExPaNDS
Resource type: slides, video
Workshop on Metadata Catalogues
https://zenodo.org/record/6414117
https://pan-training.eu/materials/workshop-on-metadata-catalogues
Presentations from the Workshop on Metadata Catalogues, which took place virtually via Zoom on the 4th April 2022.
data catalogue, SciCat, ICAT, expands, panet, PaNOSC, metadata, data management, data processing, wp3-ExPaNDS
data curator
data managers
research data engineer
ExPaNDS and PaNOSC project members
PaN users
PaN Community
